Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4617 |
Symbol | |
ID | 8360790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5761831 |
End bp | 5764908 |
Gene Length | 3078 bp |
Protein Length | 1025 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644966771 |
Product | protein of unknown function DUF1680 |
Protein accession | YP_003124259 |
Protein GI | 256423606 |
COG category | [S] Function unknown |
COG ID | [COG3533] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0602011 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.370298 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATTT ATGCTTATAT GAAATTGTAC AAAAGATTCG TGCATGTCAT CCTGTTTATG GCCTTCTGGA GCCAGGGTAT TCATAGCGCT CAGGCACAAA ATGGAGACCA GATACTGGAC GGCATCGGTG AAACGGGGAT GATAGCGCGT TATGTTTTTA ACGGAGATCT GAAAGATTGG TCCCGGAATA CCCTGCACGG TAAATCCCAG GGAAATGAAG TGTTTTTTGT CAATGACGAC CGTTTTGGAA AGGTATTATC CCTTTCCGGC AATAACAATG CTTTCATTAC ACTTCCCGCG GAAACATTGT CAGACATAGA ATCGCTTAGC ATATCAGGAT GGATATACCT GCATTCCAGC CAGACGGGGC AATGTTTTTT TGACTTTGGA AAAGATGCCG GTCAGCATCT TTTTGCAGCT CCTACCGGAA CAAGCACACA GGAAGGCTAT CAGGTAGTAA TAGCTGCGGA CAAAAGTAAT CAGCGCAGCG CTGTTGCGCC TGCCATCGCC ATAAATAAAT GGGTACATAT GGTCATCGTC ATAGATATTC CTTCGAAATC CATGCTCACC TATGTTGATA GTAAACCAGT AGGCGAAACA AAGGATATTC CTTCCGGCGT ATTGGCCTTA TTCAGTCCTG GAAAAAAGCA GCTCTATATC GGGAAGTCAT TAGTCCCCGG CGATCCCAAT CTGAATGCCA TGATACATGA TTTCCGCATT TACCGTGTTG CACTGAGTAA CAGACAGGTT GCCGGCATTT ATAATCACGC ACGACGGGGA TTGAATGAAG AAGTGGTCAA TACGACAGGC AAACAGGAGG ATGATCTCCC TCACTTCCCG CCGACAGAAG CCCGGTTATA CAATACTTAT TTAATACGTG TGGCGGATGT TAAAGTGGAG ACCTCAGTCG GAAACTTACC ACGCTTGCCC GCTTATGTAC AGGGTACCTA TCAGCATAAT AAGAAAGGGC CGCAGGTACG GGTGATCTGG CCTTCACCTG TCGACAACAC TGCGGTACTG AAAACCGGGC AATACACCCT TACAGGACGT GTACCAGGCA CGAATTTTCA GCCAAAGGCA CTTGTTACCG TAAAAAGTGT CACTCAATCC CCCGCAGCTA CTTTAAAGCT GGAGCCGTTT AAGCTGGGAC AGGTTGCACT GAAAAATGAT GCACATGGGC ATGAGACCCA ATTCGTCGAA AACCGTGATA AGTTCATACG GACATTAGCC ACTACCGATC CGAACTCCTT TCTCTATATG TTCCGTCATG CTTTTGGTCG GCAGCAGCCT GAAGGCGCTA AACCTTTAGA TGTGTGGGAC AGTCAGGATA CCAAGTTGAG AGGACATGCT ACAGGACATT ACCTGACAGC CATTGCGCAA GCTTATGCGA GTACGGGATA TGACAAGACC TTACAGCAGA ATTTCGAACA GAAAATGGCG TACATGGTCA ACACGCTCTA TGAGTTGTCC CTGTTATCAG GAAACCCTAA GGAAACAGGC GGAGTCGCCG TATCCGATCC TACCGCGGTG CCTTATGGTC CCGGCAAGTC AGGATATGAC TCAGATCTGA GTAATGAAGG TATCCGCAAT GATTACTGGA ACTGGGGTAA AGGATTCATC AGTGCTTATC CTCCGGATCA GTTTATCATG CTGGAGAAGG GCGCTAAGTA CGGCGGACAA AAGAACCAGA TATGGGCGCC CTACTACACC CTGCATAAGA TACTGGCTGG CCTGATGGAT GTTTATGAAG TAAGTGGTAA TCAAAAAGCG CTTACGGTAG CTACAGGTAT GGGAGACTGG GTATATGCCC GGTTGAGTCA TGTGCCACAG GATACACTCA TAAAGATGTG GAACACCTAT ATCGCCGGTG AATTCGGCGG CATGAATGAG GCCATGGCCC GTCTTTACCT GATTACCGGC AAACAGCAAT ACCTGCAGAC GGCGCAGTTG TTTGACAATA TCAGGGTCTT CTTTGGCGAT ACTGCACATT CACATGGACT GGCTAAAAAT GTGGATATTT TCCGTGGATT ACATGCCAAT CAGCATATCC CCCAGATCGT AGGAAGTATA GAAATGTACC GTGCTTCCAA TAATCCGGAG TATTATAAAA TAGCCGATAA CTTCTGGTAC AAGGCAGTCA ATGATTATAT GTACAGTATC GGAGGCGTCG CAGGTGCACG TAATCCCGCT AACGCGGAAT GTTTTATCAG TCAGCCTGCT ACCTTGTATG AGAACGGTTT CTCTTCTGGA GGACAGAACG AAACCTGTGC CACCTACAAT ATGCTGAAGC TAACCAGTGA CCTGTTCCTC TTCGATCAAC GGGCGGAATT CATGGACTAT TATGAGCGGG CGTTATACAA CCACATTCTT GCTTCCGTTG CCAAAGATAA CCCTGCCAAT ACCTATCACG TGCCACTCCG GCCTGGTGCA ATCAAACAGT TTGGCAATCC GGATATGACA GGTTTTACCT GTTGTAACGG TACAGCTATC GAGAGCAATA CCAAGTTGCA GAATACCATC TATTTTAAGA GCAGGGATAA TCAGGCGCTC TATGTCAATC TGTATATTCC CTCTACTTTA CAATGGACAG AGCGGAATGT AACCATAGAA CAAACAACAG ATTTCCCGAA AGAAGACGAT ACCCGTCTTA CGATCAAAGG CAATGGACAA TTTGATATCA ATGTACGTGT GCCTGGCTGG GCGACAAAAG GATTTTTTGT GAAGATTAAT GGTAAAGAAC AGGCACTTAC CGCTAAGCCG GGTACTTACC TGACCATCCG CCGGCAATGG AAAGACGGCG ATATCATAGA CCTAAAAATG CCTTTCCGGT TCCACCTTGA TCCGGTAATG GATCAGCAGA ACATTGCGAG CCTTTTTTAC GGACCGATCC TGCTGGCAGC ACAGGAAGGG GAAGCCAGAA AGGATTGGCG CAAAATAACC CTGAATGCAG ACGATATCAG CAAGTCCATC AAAGGAGATC CGCAACAATT GGAATTTACA ATTGATGATG TGGTGTTTAA ACCGTTTTAT GAAACATATG GCCGTCACTC TGTTTACCTG GATGTACAGT TGAAATAG
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Protein sequence | MEIYAYMKLY KRFVHVILFM AFWSQGIHSA QAQNGDQILD GIGETGMIAR YVFNGDLKDW SRNTLHGKSQ GNEVFFVNDD RFGKVLSLSG NNNAFITLPA ETLSDIESLS ISGWIYLHSS QTGQCFFDFG KDAGQHLFAA PTGTSTQEGY QVVIAADKSN QRSAVAPAIA INKWVHMVIV IDIPSKSMLT YVDSKPVGET KDIPSGVLAL FSPGKKQLYI GKSLVPGDPN LNAMIHDFRI YRVALSNRQV AGIYNHARRG LNEEVVNTTG KQEDDLPHFP PTEARLYNTY LIRVADVKVE TSVGNLPRLP AYVQGTYQHN KKGPQVRVIW PSPVDNTAVL KTGQYTLTGR VPGTNFQPKA LVTVKSVTQS PAATLKLEPF KLGQVALKND AHGHETQFVE NRDKFIRTLA TTDPNSFLYM FRHAFGRQQP EGAKPLDVWD SQDTKLRGHA TGHYLTAIAQ AYASTGYDKT LQQNFEQKMA YMVNTLYELS LLSGNPKETG GVAVSDPTAV PYGPGKSGYD SDLSNEGIRN DYWNWGKGFI SAYPPDQFIM LEKGAKYGGQ KNQIWAPYYT LHKILAGLMD VYEVSGNQKA LTVATGMGDW VYARLSHVPQ DTLIKMWNTY IAGEFGGMNE AMARLYLITG KQQYLQTAQL FDNIRVFFGD TAHSHGLAKN VDIFRGLHAN QHIPQIVGSI EMYRASNNPE YYKIADNFWY KAVNDYMYSI GGVAGARNPA NAECFISQPA TLYENGFSSG GQNETCATYN MLKLTSDLFL FDQRAEFMDY YERALYNHIL ASVAKDNPAN TYHVPLRPGA IKQFGNPDMT GFTCCNGTAI ESNTKLQNTI YFKSRDNQAL YVNLYIPSTL QWTERNVTIE QTTDFPKEDD TRLTIKGNGQ FDINVRVPGW ATKGFFVKIN GKEQALTAKP GTYLTIRRQW KDGDIIDLKM PFRFHLDPVM DQQNIASLFY GPILLAAQEG EARKDWRKIT LNADDISKSI KGDPQQLEFT IDDVVFKPFY ETYGRHSVYL DVQLK
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