Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4609 |
Symbol | |
ID | 8360782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5750648 |
End bp | 5753917 |
Gene Length | 3270 bp |
Protein Length | 1089 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 644966763 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003124251 |
Protein GI | 256423598 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0115858 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.547396 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAC TTTTCGTACT CTGTACCGTC ATCAGTCTGC AAATAACAGC GGCATCTTTT GCACAGCAAG TTACGCTGAA CTATAAAAAC GCGCCCCTGC GGGAAGTCTT GCAGAGCATC CGTAAACAAA CGGGGTATTA CTTCTTCTTT TCGTCGGAAT ATCTGGACAA AGCAGCGCCG GTATCCGTAT CCGTTACAGA TGCGACACTG GAACACACAT TGGCGGTCGT GTTTAAAGGA CAGCCGTTTG AATATGCGGT GAAGGGGAAA ATGATTACGA TAAGGCCAAT GGAGCAATCT TTTGCAGATA AAGGAGCGAT GGCTCTTTCG GTGATTACGG TAAGGGGAAG GGTCATGGAT GAAGAAGGGA ATCCTTTGCC GGGTGTGTCC GTGATATTGA AGGAGCAAAA TGGGAAGATG GCGGTTACGG ATCAGCAGGG GAAGTTTTCA TTGGATGGGG CGCCGGATAA GGGGACGTTA CTATTCAGAA TGATTGGCCG TGAAACAAAA GAAGTAATGT ATGAGGATGC CGTTTCTTTG ACAATCGTAC TCAAAGAAAC CGACGCCGAT CTGAAGGAAA TACAAATTGT GGCATATGGA AAAGTAGCCA AAGAATACGC TACCAGTAAT ATTAATGGTA TCAGTGCTGC GGAAATTTCG ACGCAACCTG TGAATGATCC TATTCTTGCC TTAACAGGGA GAGTACCTGG TCTGATCGTA CAACAAACAG GCGGCGCACC CGGAAGCGCG CTTAACGTGG TTATCCAGGG ATATAACAGT ATATCAAACG GTAATGGCCC CTTTTATGTC ATAGACGGAA TGCCTTATCC GGCAAATAAC CTGGGTACAA TATCAGGAAC AGCTTACGGA TATGGTGGAG GCAACAATTT CAGCTACATT AACCCTGCCG ACATTGAAAG CATTGAGATA CTAAAGGATG CCGATGCCAC CGCTATTTAC GGATCAAGAG CTGCCAATGG CGCTATCCTG ATTACTACCA AAAAAGGAAA GTCAGGAAAA ACAGTGATCG ATATCCGCTC ACAAACCGGA TGGGGTAAGA TCACACGTAA ACTCGACCTG CTCAATACAC CACAATATAT CGCCCTTCGC AAAGAGGCGT ATAAAAACGG TGGAAATACC CCCGGCGGCG GCGATTATGA TATTAACGGC GTATGGGATC AAAACCGTTA TACCGACTGG CAAAATGTGC TTGTAGGCGG GACTGCTGAG TTTTCAGATA TACAGGCATC CGTTTCCGGA GGGAACGCCA ATACACAATT CAGAACCGCA ATGGGATTTA ACCGGCAAAC GACGGTATAT CCAGGTGATC TGAATGATAA GAAAATCAAC CTGACATTCA ACATTAATCA TTTGTCCACC AATCAAAAGC TGCATTTTAA TCTCTCCGGC ACCTATTTAC ATGATAATAA CCGCTTGTAT GCCATGGACC TGATGACAGC GGCAGTAACC CTGTCGCCGA ATGCCCCCAA ACTATATAAC GACGATGGCA CATTGAACTG GGAGAAAGTA CCTGGTAATT CCACAGCCTA CAGCTTTGAC AATCCACTGG CAGCCATGAA TATGAAGTAT AATGCCAGAA CCTACAATCT ACTTGGCAAT GCCATGATCG GTTACGAAAT AATACCAGGG CTTGAAATAA AATCCACATT CGGATATAAC AGAATTACAA GCGACGAAAC AAATGTTAGT CCTCAGAGTT CCTTCAGACC AGACAAAACA TTTCTCAGAA GGAGTGTGAG TTATGGAAGC GGGGCTATCT CCTCCTATAT TATCGAACCA CAGCTGACAT ATGTAGGCAA GTTATTCAAC GGACATTTTG ATGTATTACT CGGTAGCACT TTCCAGGACA ACGACAATAC CCGGCAAACA TATAATGCAA CAGGATTCAG TACAGATGAA CAACTGAAAA ATGTACAATC AGCCACTACT ATTACACTGA CTGGAAACAC GGCATTCAAA TACCGGTATT CTGCAATTTT CGGCAGATTA AACTATCGTT ATAGCGACAG ATATGTGATC AATTTAACCG CCCGTCGGGA TGGCAGCAGC CGTTTCGGAC CGGAGAGTCT GTTTAATAGT TTTTACGCTA TCGGTGGTGC ATGGTTGTTC AATAAAGAAC ATTTCATCCG TAAACTCGTA CCCTCGCTCA GCACTGGTAA ACTACGCGTC AGCTATGGCA CCACCGGAAA TGATCAGATC GGAGAATACG GTTTTCTCAA TTTGTATGAC GTCTACTATA ATGACATCCC CTATCAAAAT ACCAGCGGCC TGATCGTAAA TGGATTCTCT AACCCCTATT TGCAATGGGA AGAGACCAGG AAATTAAACT TCGGACTGGA CCTGGGTATT TTCGACGATG CCATTACCTT AACAGCCAAT TTCTTCAGGA ACCGGTCCTC CAATCAACTC CTAAATGATA ATGTACCTGC TTACACCGGG TTTCCGATAT TCCGCAGGAA CTTACCGGCC ACTGTACAAA ACGCCGGATG GGAGTTGCTG TTAGCGGCGG CTCCCTTTAA AGCCAGAGCC ATACAATGGA ACACTTCACT TAACCTGACG ATTCCCAGGA ACAAGCTTGT TGACTACCCC AATTTGCAGG AAAGTAACAA CTTCAATCAA TTCATTATCG GACAGCCGAC AAACATTATC AGAACCTTTC ATCTTATCGG TGTAAACCCG GAAACAGGGT TGTTTGAATA CCTGGGTAGC GACGGTAAAC CTACATCCAG TCCGGCAGAT CCGACTGATA AAACCGCACT GGTAGATGTA AATCCAAAAT TTTATGGCGG TTTTTACAAT TCAATCACCT ATAAGGGACT AAATATCAGT TTCCTCTTTC AGTTTGTGAA GCAAACGGGA GTTAACTACA AGTTTGGCAG AGCCCCTGGT GTTCAGATGC TGAATCAACC TTCAAGTCTG CTTGACAGAT GGCATAGTAC CGGAGACCAT GCTTTGTTCC AGAAGGTCTC GACCAATTTC GGGGAGATAC TCGATCCTTT ACTTGCCATT GGATCAAGCG ATGCGGCCTA TTCTGACGCC TCTTATATCC GTCTTAAAAA TGTGTCTTTT TCTTATAATC TGCCAGCACA TTGGATGAAG ACATCACACC TCTCGCAGGC CCGCATTTTC GTCCAGGGAC AAAACCTGCT GACGTTTACC AATTATTATG GGTCAGATCC GGAATCACAA CTGAGCGCTA CCCTCCCACC ACTTAAACTT TTCACAATAG GCTTTCAACT CACCTTATAA
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Protein sequence | MMKLFVLCTV ISLQITAASF AQQVTLNYKN APLREVLQSI RKQTGYYFFF SSEYLDKAAP VSVSVTDATL EHTLAVVFKG QPFEYAVKGK MITIRPMEQS FADKGAMALS VITVRGRVMD EEGNPLPGVS VILKEQNGKM AVTDQQGKFS LDGAPDKGTL LFRMIGRETK EVMYEDAVSL TIVLKETDAD LKEIQIVAYG KVAKEYATSN INGISAAEIS TQPVNDPILA LTGRVPGLIV QQTGGAPGSA LNVVIQGYNS ISNGNGPFYV IDGMPYPANN LGTISGTAYG YGGGNNFSYI NPADIESIEI LKDADATAIY GSRAANGAIL ITTKKGKSGK TVIDIRSQTG WGKITRKLDL LNTPQYIALR KEAYKNGGNT PGGGDYDING VWDQNRYTDW QNVLVGGTAE FSDIQASVSG GNANTQFRTA MGFNRQTTVY PGDLNDKKIN LTFNINHLST NQKLHFNLSG TYLHDNNRLY AMDLMTAAVT LSPNAPKLYN DDGTLNWEKV PGNSTAYSFD NPLAAMNMKY NARTYNLLGN AMIGYEIIPG LEIKSTFGYN RITSDETNVS PQSSFRPDKT FLRRSVSYGS GAISSYIIEP QLTYVGKLFN GHFDVLLGST FQDNDNTRQT YNATGFSTDE QLKNVQSATT ITLTGNTAFK YRYSAIFGRL NYRYSDRYVI NLTARRDGSS RFGPESLFNS FYAIGGAWLF NKEHFIRKLV PSLSTGKLRV SYGTTGNDQI GEYGFLNLYD VYYNDIPYQN TSGLIVNGFS NPYLQWEETR KLNFGLDLGI FDDAITLTAN FFRNRSSNQL LNDNVPAYTG FPIFRRNLPA TVQNAGWELL LAAAPFKARA IQWNTSLNLT IPRNKLVDYP NLQESNNFNQ FIIGQPTNII RTFHLIGVNP ETGLFEYLGS DGKPTSSPAD PTDKTALVDV NPKFYGGFYN SITYKGLNIS FLFQFVKQTG VNYKFGRAPG VQMLNQPSSL LDRWHSTGDH ALFQKVSTNF GEILDPLLAI GSSDAAYSDA SYIRLKNVSF SYNLPAHWMK TSHLSQARIF VQGQNLLTFT NYYGSDPESQ LSATLPPLKL FTIGFQLTL
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