Gene Cpin_4609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4609 
Symbol 
ID8360782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5750648 
End bp5753917 
Gene Length3270 bp 
Protein Length1089 aa 
Translation table11 
GC content45% 
IMG OID644966763 
ProductTonB-dependent receptor plug 
Protein accessionYP_003124251 
Protein GI256423598 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0115858 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.547396 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAAC TTTTCGTACT CTGTACCGTC ATCAGTCTGC AAATAACAGC GGCATCTTTT 
GCACAGCAAG TTACGCTGAA CTATAAAAAC GCGCCCCTGC GGGAAGTCTT GCAGAGCATC
CGTAAACAAA CGGGGTATTA CTTCTTCTTT TCGTCGGAAT ATCTGGACAA AGCAGCGCCG
GTATCCGTAT CCGTTACAGA TGCGACACTG GAACACACAT TGGCGGTCGT GTTTAAAGGA
CAGCCGTTTG AATATGCGGT GAAGGGGAAA ATGATTACGA TAAGGCCAAT GGAGCAATCT
TTTGCAGATA AAGGAGCGAT GGCTCTTTCG GTGATTACGG TAAGGGGAAG GGTCATGGAT
GAAGAAGGGA ATCCTTTGCC GGGTGTGTCC GTGATATTGA AGGAGCAAAA TGGGAAGATG
GCGGTTACGG ATCAGCAGGG GAAGTTTTCA TTGGATGGGG CGCCGGATAA GGGGACGTTA
CTATTCAGAA TGATTGGCCG TGAAACAAAA GAAGTAATGT ATGAGGATGC CGTTTCTTTG
ACAATCGTAC TCAAAGAAAC CGACGCCGAT CTGAAGGAAA TACAAATTGT GGCATATGGA
AAAGTAGCCA AAGAATACGC TACCAGTAAT ATTAATGGTA TCAGTGCTGC GGAAATTTCG
ACGCAACCTG TGAATGATCC TATTCTTGCC TTAACAGGGA GAGTACCTGG TCTGATCGTA
CAACAAACAG GCGGCGCACC CGGAAGCGCG CTTAACGTGG TTATCCAGGG ATATAACAGT
ATATCAAACG GTAATGGCCC CTTTTATGTC ATAGACGGAA TGCCTTATCC GGCAAATAAC
CTGGGTACAA TATCAGGAAC AGCTTACGGA TATGGTGGAG GCAACAATTT CAGCTACATT
AACCCTGCCG ACATTGAAAG CATTGAGATA CTAAAGGATG CCGATGCCAC CGCTATTTAC
GGATCAAGAG CTGCCAATGG CGCTATCCTG ATTACTACCA AAAAAGGAAA GTCAGGAAAA
ACAGTGATCG ATATCCGCTC ACAAACCGGA TGGGGTAAGA TCACACGTAA ACTCGACCTG
CTCAATACAC CACAATATAT CGCCCTTCGC AAAGAGGCGT ATAAAAACGG TGGAAATACC
CCCGGCGGCG GCGATTATGA TATTAACGGC GTATGGGATC AAAACCGTTA TACCGACTGG
CAAAATGTGC TTGTAGGCGG GACTGCTGAG TTTTCAGATA TACAGGCATC CGTTTCCGGA
GGGAACGCCA ATACACAATT CAGAACCGCA ATGGGATTTA ACCGGCAAAC GACGGTATAT
CCAGGTGATC TGAATGATAA GAAAATCAAC CTGACATTCA ACATTAATCA TTTGTCCACC
AATCAAAAGC TGCATTTTAA TCTCTCCGGC ACCTATTTAC ATGATAATAA CCGCTTGTAT
GCCATGGACC TGATGACAGC GGCAGTAACC CTGTCGCCGA ATGCCCCCAA ACTATATAAC
GACGATGGCA CATTGAACTG GGAGAAAGTA CCTGGTAATT CCACAGCCTA CAGCTTTGAC
AATCCACTGG CAGCCATGAA TATGAAGTAT AATGCCAGAA CCTACAATCT ACTTGGCAAT
GCCATGATCG GTTACGAAAT AATACCAGGG CTTGAAATAA AATCCACATT CGGATATAAC
AGAATTACAA GCGACGAAAC AAATGTTAGT CCTCAGAGTT CCTTCAGACC AGACAAAACA
TTTCTCAGAA GGAGTGTGAG TTATGGAAGC GGGGCTATCT CCTCCTATAT TATCGAACCA
CAGCTGACAT ATGTAGGCAA GTTATTCAAC GGACATTTTG ATGTATTACT CGGTAGCACT
TTCCAGGACA ACGACAATAC CCGGCAAACA TATAATGCAA CAGGATTCAG TACAGATGAA
CAACTGAAAA ATGTACAATC AGCCACTACT ATTACACTGA CTGGAAACAC GGCATTCAAA
TACCGGTATT CTGCAATTTT CGGCAGATTA AACTATCGTT ATAGCGACAG ATATGTGATC
AATTTAACCG CCCGTCGGGA TGGCAGCAGC CGTTTCGGAC CGGAGAGTCT GTTTAATAGT
TTTTACGCTA TCGGTGGTGC ATGGTTGTTC AATAAAGAAC ATTTCATCCG TAAACTCGTA
CCCTCGCTCA GCACTGGTAA ACTACGCGTC AGCTATGGCA CCACCGGAAA TGATCAGATC
GGAGAATACG GTTTTCTCAA TTTGTATGAC GTCTACTATA ATGACATCCC CTATCAAAAT
ACCAGCGGCC TGATCGTAAA TGGATTCTCT AACCCCTATT TGCAATGGGA AGAGACCAGG
AAATTAAACT TCGGACTGGA CCTGGGTATT TTCGACGATG CCATTACCTT AACAGCCAAT
TTCTTCAGGA ACCGGTCCTC CAATCAACTC CTAAATGATA ATGTACCTGC TTACACCGGG
TTTCCGATAT TCCGCAGGAA CTTACCGGCC ACTGTACAAA ACGCCGGATG GGAGTTGCTG
TTAGCGGCGG CTCCCTTTAA AGCCAGAGCC ATACAATGGA ACACTTCACT TAACCTGACG
ATTCCCAGGA ACAAGCTTGT TGACTACCCC AATTTGCAGG AAAGTAACAA CTTCAATCAA
TTCATTATCG GACAGCCGAC AAACATTATC AGAACCTTTC ATCTTATCGG TGTAAACCCG
GAAACAGGGT TGTTTGAATA CCTGGGTAGC GACGGTAAAC CTACATCCAG TCCGGCAGAT
CCGACTGATA AAACCGCACT GGTAGATGTA AATCCAAAAT TTTATGGCGG TTTTTACAAT
TCAATCACCT ATAAGGGACT AAATATCAGT TTCCTCTTTC AGTTTGTGAA GCAAACGGGA
GTTAACTACA AGTTTGGCAG AGCCCCTGGT GTTCAGATGC TGAATCAACC TTCAAGTCTG
CTTGACAGAT GGCATAGTAC CGGAGACCAT GCTTTGTTCC AGAAGGTCTC GACCAATTTC
GGGGAGATAC TCGATCCTTT ACTTGCCATT GGATCAAGCG ATGCGGCCTA TTCTGACGCC
TCTTATATCC GTCTTAAAAA TGTGTCTTTT TCTTATAATC TGCCAGCACA TTGGATGAAG
ACATCACACC TCTCGCAGGC CCGCATTTTC GTCCAGGGAC AAAACCTGCT GACGTTTACC
AATTATTATG GGTCAGATCC GGAATCACAA CTGAGCGCTA CCCTCCCACC ACTTAAACTT
TTCACAATAG GCTTTCAACT CACCTTATAA
 
Protein sequence
MMKLFVLCTV ISLQITAASF AQQVTLNYKN APLREVLQSI RKQTGYYFFF SSEYLDKAAP 
VSVSVTDATL EHTLAVVFKG QPFEYAVKGK MITIRPMEQS FADKGAMALS VITVRGRVMD
EEGNPLPGVS VILKEQNGKM AVTDQQGKFS LDGAPDKGTL LFRMIGRETK EVMYEDAVSL
TIVLKETDAD LKEIQIVAYG KVAKEYATSN INGISAAEIS TQPVNDPILA LTGRVPGLIV
QQTGGAPGSA LNVVIQGYNS ISNGNGPFYV IDGMPYPANN LGTISGTAYG YGGGNNFSYI
NPADIESIEI LKDADATAIY GSRAANGAIL ITTKKGKSGK TVIDIRSQTG WGKITRKLDL
LNTPQYIALR KEAYKNGGNT PGGGDYDING VWDQNRYTDW QNVLVGGTAE FSDIQASVSG
GNANTQFRTA MGFNRQTTVY PGDLNDKKIN LTFNINHLST NQKLHFNLSG TYLHDNNRLY
AMDLMTAAVT LSPNAPKLYN DDGTLNWEKV PGNSTAYSFD NPLAAMNMKY NARTYNLLGN
AMIGYEIIPG LEIKSTFGYN RITSDETNVS PQSSFRPDKT FLRRSVSYGS GAISSYIIEP
QLTYVGKLFN GHFDVLLGST FQDNDNTRQT YNATGFSTDE QLKNVQSATT ITLTGNTAFK
YRYSAIFGRL NYRYSDRYVI NLTARRDGSS RFGPESLFNS FYAIGGAWLF NKEHFIRKLV
PSLSTGKLRV SYGTTGNDQI GEYGFLNLYD VYYNDIPYQN TSGLIVNGFS NPYLQWEETR
KLNFGLDLGI FDDAITLTAN FFRNRSSNQL LNDNVPAYTG FPIFRRNLPA TVQNAGWELL
LAAAPFKARA IQWNTSLNLT IPRNKLVDYP NLQESNNFNQ FIIGQPTNII RTFHLIGVNP
ETGLFEYLGS DGKPTSSPAD PTDKTALVDV NPKFYGGFYN SITYKGLNIS FLFQFVKQTG
VNYKFGRAPG VQMLNQPSSL LDRWHSTGDH ALFQKVSTNF GEILDPLLAI GSSDAAYSDA
SYIRLKNVSF SYNLPAHWMK TSHLSQARIF VQGQNLLTFT NYYGSDPESQ LSATLPPLKL
FTIGFQLTL