| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4580 |
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| Symbol | |
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| ID | 8360753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5722338 |
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| End bp | 5726543 |
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| Gene Length | 4206 bp |
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| Protein Length | 1401 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644966735 |
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| Product | YD repeat protein |
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| Protein accession | YP_003124223 |
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| Protein GI | 256423570 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.315308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGTCA GTAACAAACA CTTTACGCCT GTTATAGGAC TCGATATTCA CATTGTAATA
CTGCTCGGTT TTCCCATTCC ATTGCCACAT CCATATATCG GTCTGGTGAT TGATCCCATG
GACTATATCC CCTTTATCGG GGCCACCACC AAAGTAAATC ATGTGCCCAG GGGTAAAAGC
GACACCTCCG GTCTTATCAT CATATTATTT CATATTCCAA TGGGCGGCCC TTTTCTGCTG
GCTCCTATGA TCGGACACGA TTCTGTCAAC TTCTTCGGTA GTAAGACCGT CAAAGTAGAA
GGCAATCTCA TGACGCCTTC CGGACACATG CTGATGACCT GCAATGACAT TGGTATCCCG
CTTTCCCTGC AGCCCGGAAA GAAGTTGAAG CCGATTCCCA GCATATATCT GCCAACCTCC
TTTTCTATTC CGCTGTCCTT TGGCAAACCT GTAATGGTCG GCGGTCCTTA TATACCGGAT
TGGGCAGGTG CATTACTGAA CCTGGTCATG TCTTTTGGCT TTGGCGCATT GATGAAAGGA
TTGGGAAAAG GCTTAAAGAA ACTGGGCAAA GCGGCTAAAA AAGCTAAAAG GAAAATCACT
GATTTCAACC TGGCACGGCA GAATAGCCTG GGTAGTAACA AACTCAGCGG ACTGCTTTGT
AAGATGGGTT TTGAACCGGT TGATCTCGTG CAGGGCATTG TGGTATATGA GGGTACGGAC
TTTGAATTGC CCGGTCCCAT CCCGCTTAGC TGGGAACGCT GCTGGAACAG TGACAGTACT
TATCAGGGAC CACTAGGTCA TGGTACTCAT TTAAGCTATG ACATGCGGGT GCTGGATTTC
GCGGAAGAAG AAGCGACCTG CTTATTATTG GGAGATGGCC GCCGTGTTAT ATTCGACAGA
CTCCCCTACC CTGGTGACAG TGAGTTTGAC CGTTCTGAAA GGATGACACT CACCCGGACC
GACCTGGATG AATACCTGCT GTTCAATCAC CAGGAACGAC TCTTTTATCA TTTCCGCTCA
CTACAACCTG GCGATACCGA ATACCGGCTT TATTCCATCA GTGATGAAGC CGGATTCATG
ATCAGTTTTC ACTACAATAA CAAGGGAGCT CTGATCCGTA TCGTCGACAG TGCAGGACGA
CACCTGCATA TAGAAAATGA CTCCAAAGGA CGTATTACGG GCGTCCGTGC GCATCACCGT
GGACAACAGA AACAGCTGGT CCGCTATGAA TATAATACCG CTGGTGATAT GACCGCCATT
ATTGACGCAC TGGAACAGAC AACCCGGATG CAATATCATC AGCACCTGAT GATGAAGAAA
ACAGACCGTA ACGGACAAAG CTTTTACTGG GAATATGACG GCAAAGGACG TTGTGTGCAT
ACCTGGGGAG ATGAAGGGCT GCTGGAAGGA CGGATCGAAT ACAATCCACA GGAAGGCTAT
AACCTGGTAA CGAATGCCCT CGGTCAGACC ACCACTTACT ACTACACACC AGACTTCCTG
GTGACACAGA TAAAAGATCC GCTGGGCAAC TCGCAGTTCA CAGCATATAC AGAAGATGCG
GAGATCTACC GGGAAATAGA TGAAGAAGCC AATGTAACCG GTTATGCCTA TGACGAAAAA
GGCAACCGCA CTCAAATTAT ACACCCGGAT GGCAGTACAA TATTCTTCAA CTATGATGAT
GAAGACCGGC TCTTACTCAG CGTAGGCGCA CAGGGCGGCA GCCGCTCTTA TGTGTATTAT
GAAGAGGGAC CATTGAAGGG ACTCCTGCAC AGCTTTACAG AAGCGGACGG CAGAATGAGC
ATTTTCAGTT ACAATGAAAA GAAACTGCTG GTAAAAGTAG AAGACAGACA GCGCAACAGT
ACCCTGCTGG AATATGATGA AGACCACAAT ATTTCAGCAC TTATCCTGCA AAATGGAGGC
CATAGCAGCT GGCAATACGA TGCCTGGGGA CAATGTATCC ATACAGTCAA TTCCCTCCAG
CAGGAGCAGC ATTTCCGTTA TGATCTGCTG GGCCGTGCTA CGGAGATCTT ATACGCCGAC
GGCAATCAGC TGCAACTACG ATACAATGCC TATAACGAGG TAGTAGAGGC AAAAGACAGG
AACCGGCATC TCCGCTTTGC ATACACCCCA CTGGGCAGTG TCAGGATGCG TGAAGAGAAT
GGCGCTAAGC TCCATTTCCT GTATAACAAT GCAGAACAGC TGACCAGTCT GATCAACGAA
AAAGGAGAAA TGTACCGCCT GGGTCGTAAT GGCCGTGGAG ATATTATCCA TGAAACCGGC
TTTGACGGTA TACAGAGACA TTACCACCGG GATGCGGCAG GCAAAGTAGT CAGGACCGAA
CGTCCCGGCC ACCGCTGGAC GGAATATGAA TATGATTTCA ATGGTCGCGT GACCCGGGCA
GAACATAGTG ACGGCAGCTG GGAAACCTAT AGCTACGACC GGAACGGTCA GCTGATAGAA
GCGATGAATG AGCATAGCAC GGTCAGACTG CAACGCGATG CCATGGGACG TATTGTGCAG
GAATATCAGA ATGAGTTTAC CGTCAGCAGT ACCTATGACA AACACAATCG CCGTCAGCAG
GTGCAAAGCA GTCTGGGAGC TGATCTGCTT ATACAGCGCA ATGCATTGGG TGAAGTCACC
GGTATGCAGG CAGATGTGGC AGGATCTGCT CAGCCATGGC ATACGGAGAT CCTCCGGAAT
ATACAAGGAC TGGAAATCGG GCGTATACTA CCCGCCGGAA TAGAAAGTAC CTGCACCTAC
AACCCACTGG GCTTGCCGGA AAGCTATGTC GCTACTATCG GTGGCAACAG CATCCGCCGC
AGACATTATA GCTGGGATGC GGCCCAGCAA CTGAAACAGA TTGTCAATGG CATTACCCAT
GGAGTCGTTA AATACAGTCA TGACGATACC GGTAATCTGA CCTGGGCGCA ATATGAAGAT
GGTCAGTATG ACTATCGCCT GCCTGATAAA ACAGGTAATA TTTACCGTAC ACAGGCAAGG
AATGATCGCA AATACGGCCC CGGTGGTAAA CTGGCCGAAA GTACAGAGGC CCGTTTCATT
TATGACGAGG AAGGCTTCCT GGTGAAAAAG ATCGATCTGA AAGCTGCCGA TGCAGTATGG
CAATACGAGT GGTATGGCAA CGGCATGTTG AAGAAAGTGA CCCGTCCTGA CAACAAGGTC
GTGGAGTTCC GTTACGACGC ATTGGGACGA CGCATAGAAA AGCAATATAA GGGACAGATT
ACGCGCTTTG TATGGGATGG TAATATCACA CTCCATCAAT GGCATTATCC TGCCAGTGAA
CGGCCTGCAA TTGAAATTGA CGAACTGGGA GATATAAGGC AGCATCATCC GGAACCTGTG
CCTGCTGAAA ATCTGATCAC CTGGGTATTT GAAGAAGGTA CGCTGATACC GGTCGCTAAG
CTGACCCAAG ACGCCAGATA TGCTATCCTC TCCGATTACC TGGGTACACC GGCGGAAGCC
TACGATGCCT CCGGGGAAAA GGTATGGGAA GGGGAATTGG ATATTTATGG AAAGCTGCGT
AAGTTAGCCG GCGCCAGCGA TTTTATTCCA TTCCGCCGGC AGGGACAATA TGAAGATGTC
GAAACGGGCT TATACTATAA CCGTTTCCGA TATTATAGTC CGCTGGAAGG ACTGTATATC
AGTCAGGATC CGATCCGACT GGAAGGCGGC AGCCGGTTCT ATGAATATTC CAGGTGCCCG
ACCCTGATAC TGGATCCATT TGGTCTGGTA GACTTCTATC ACGCTACTTC CAGTCCGGGC
GCCACAAAGG GTGTATTAGG CGGGGTCGAT CCTTCAACAG GACGGCCTAA CCTCGATTTC
AACCCATCTG GACAGGGCGG TTTTTATGTC ACCAATGACC TGGAACAGGC ACGTAGCTGG
GTGAAAAATG GCGGTTCTGT GATCCATTAT GATATACCGG AAAGCGAACT GGCCAAGCTG
AGTATTAAAA CATTTGACAG CGCTTCAGAT GAATGGGCAG ACTATGTTAA ACAGGGAAGA
GCGGGTACCC TGGCGCATGA CTTTGACGGT GTCGAAGGGC CAATGATCGC TCTCAAAGCC
AGTAAAAAAG CAGGTAAGCC GAAACCTGTT AAATTACAGC CGGACGGCAG ACTCGGACAT
CAGCTGGCCA TCTTCACCGA TAAGGCAGCA AAACTCTTTG ATAAATTCTT AAAAGGTTGC
GTATAA
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| Protein sequence | MLVSNKHFTP VIGLDIHIVI LLGFPIPLPH PYIGLVIDPM DYIPFIGATT KVNHVPRGKS
DTSGLIIILF HIPMGGPFLL APMIGHDSVN FFGSKTVKVE GNLMTPSGHM LMTCNDIGIP
LSLQPGKKLK PIPSIYLPTS FSIPLSFGKP VMVGGPYIPD WAGALLNLVM SFGFGALMKG
LGKGLKKLGK AAKKAKRKIT DFNLARQNSL GSNKLSGLLC KMGFEPVDLV QGIVVYEGTD
FELPGPIPLS WERCWNSDST YQGPLGHGTH LSYDMRVLDF AEEEATCLLL GDGRRVIFDR
LPYPGDSEFD RSERMTLTRT DLDEYLLFNH QERLFYHFRS LQPGDTEYRL YSISDEAGFM
ISFHYNNKGA LIRIVDSAGR HLHIENDSKG RITGVRAHHR GQQKQLVRYE YNTAGDMTAI
IDALEQTTRM QYHQHLMMKK TDRNGQSFYW EYDGKGRCVH TWGDEGLLEG RIEYNPQEGY
NLVTNALGQT TTYYYTPDFL VTQIKDPLGN SQFTAYTEDA EIYREIDEEA NVTGYAYDEK
GNRTQIIHPD GSTIFFNYDD EDRLLLSVGA QGGSRSYVYY EEGPLKGLLH SFTEADGRMS
IFSYNEKKLL VKVEDRQRNS TLLEYDEDHN ISALILQNGG HSSWQYDAWG QCIHTVNSLQ
QEQHFRYDLL GRATEILYAD GNQLQLRYNA YNEVVEAKDR NRHLRFAYTP LGSVRMREEN
GAKLHFLYNN AEQLTSLINE KGEMYRLGRN GRGDIIHETG FDGIQRHYHR DAAGKVVRTE
RPGHRWTEYE YDFNGRVTRA EHSDGSWETY SYDRNGQLIE AMNEHSTVRL QRDAMGRIVQ
EYQNEFTVSS TYDKHNRRQQ VQSSLGADLL IQRNALGEVT GMQADVAGSA QPWHTEILRN
IQGLEIGRIL PAGIESTCTY NPLGLPESYV ATIGGNSIRR RHYSWDAAQQ LKQIVNGITH
GVVKYSHDDT GNLTWAQYED GQYDYRLPDK TGNIYRTQAR NDRKYGPGGK LAESTEARFI
YDEEGFLVKK IDLKAADAVW QYEWYGNGML KKVTRPDNKV VEFRYDALGR RIEKQYKGQI
TRFVWDGNIT LHQWHYPASE RPAIEIDELG DIRQHHPEPV PAENLITWVF EEGTLIPVAK
LTQDARYAIL SDYLGTPAEA YDASGEKVWE GELDIYGKLR KLAGASDFIP FRRQGQYEDV
ETGLYYNRFR YYSPLEGLYI SQDPIRLEGG SRFYEYSRCP TLILDPFGLV DFYHATSSPG
ATKGVLGGVD PSTGRPNLDF NPSGQGGFYV TNDLEQARSW VKNGGSVIHY DIPESELAKL
SIKTFDSASD EWADYVKQGR AGTLAHDFDG VEGPMIALKA SKKAGKPKPV KLQPDGRLGH
QLAIFTDKAA KLFDKFLKGC V
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