| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4559 |
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| Symbol | |
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| ID | 8360732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5698617 |
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| End bp | 5701718 |
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| Gene Length | 3102 bp |
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| Protein Length | 1033 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644966714 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003124202 |
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| Protein GI | 256423549 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00904545 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAT GCTTATCTAG GGTAGTGACG TCTGTTTCAC TACAGCAATG GCTCCTTATC
CTCCTTTTTT CCCTGTCCCA TATCCCTGTA TTGCAGGCAC AGAAGACCAG TGTGGCAGGA
AGGGTGACTG AAGGGAAAGA CGCTTTACCC GGCGTAAGTG TGCGGGTAAA GGGGACAAAC
CAGGGAGCAC TGACAAATGA ACAGGGGCGT TTCACCCTGA CAGCAGCACC GGGCGATACC
CTGGTCTTCA ATCACATGGG CTATTCTCCA CAGGAAATTA TTGTAAAAGG CGGAGCCGCT
GTTAATGTCT CCCTTGTTAC CAGTTCTCAG AATGTAAATG AAGTGGTAGT CGTTGGATAC
GGTACCCAGA AAAAAGCAAC CCTGACAGGG TCTATTTCTG TGGTTAAGGG GTCCGATATT
ATCAAAAGTC CGCAGCCAAA CGTATCCAAT GCACTGGCCG GTCGTTTCTC CGGAGTGATC
ACCAACAACC GCTCCGGTGA ACCGGGCTAT GACGGTTCTA ATATCACCAT ACGTGGTCTG
GCTACTCCGG GTAGCAACGA CGTCCTGATC GTGGTAGATG GTGTGCCGGG ACAGATCGGC
GGACTGGATC GACTGGATCC GAATGATATC GAAAGCATCA GCGTACTGAA AGACGCTTCC
GCAGCTGTAT ATGGTAGCCG TGCAGCAAAC GGGGTGATCC TCGTGACCAC CAAACGGGGT
AAAACCGGTA AGCCTGCCAT CAGCTACAGT TTTAACCAGG GTTTTTCTTC TCCGACCAGA
CTGCCTAAAA TGGCAGATGC AGCCACCTAT GCAGAGATCA CTAATGAGAT CCGTTATTAT
GGTAGTCCTG CAGGCGGTAT GAACCAGCTC TATTCTGCCG CAGAAATCCA GAAATTCAGG
GATGGTTCCG ATCCCCTGAA TTACCCTAAT ACAGACTGGC AGAAAGAGGC ACTGAAAAGT
GTCGCGCTGC AGAACCAGCA TAACCTGTCA GTAAGCGGCG GCACCGACAA CGTAAGATAT
TACGCTTCTC TCGGTATGAT CAAACAGGAT GGCATTTACA GGGAAGGGGT GACCGACTAT
CATCAGTATA ACTTCCGGTC TAATATCGAT GCCGATGTTA CCAAACGACT GAAAGTAGGT
ATTTATCTCT CCGGTCGTCA GGAAGACCGC CTTTATCCTC AAACAGGCGC CGGAGACATT
TTCCGTTCGA TCTACCGTGC TTATCCGACC GTAGCTGCCC GTTACCCGAA TGGCCTCCCT
ACTTCCGGTA TCGAAAATAA TAACCCGGTA TTACAGGTAA CAGACATCGG TGGTACCAAT
CGTAATCCGA CACAGGTGTT CAATGGTATC CTGAAAGGTA GCTACGCCAT ACCAGGTGTG
GATGGTCTAT CCCTGGATGG TTTCTTCTCC GTGGATAAAT CCTGGAGCTT TGCCAAATCA
TTCAGCAAAC CTTACGCTGT TTACCTGTAT GATAAAACTG CCAATACTTA TAACAAGACG
ATTGTAGGTG GCGCCGCGGG AGCCGCAACT TTATCACAGG GACAGCTGAA CCGCTCTCTG
ATTGTTTCAA ATATTAAACT GAACTACGCC AGGAAATTCG GTAAACATGA TGTAAACGCC
TTCATCGCTT ATGAGCAAAG CAAAACTGCA CAGGATAGCA TGGGCGCATA CAGAATGAAT
TTCCCGACTT CTGCAACGCC GGAGCTTTCT CAGGGTGGTG CAGCCGCTAC TGATAAGAAC
AACTCCGGTA ACAGCTATAA TTTCACCAGG AAAAGTTACT TCGGCCGTAT CGCTTATAAC
TACGAAGAGA AGTACCTGCT GGAAGCACAG GCCCGTATCG ATGGTTCCTC CACCTTCCCT
AAAGGGAATC AGTACGGTTT CTTCCCTTCC ATATCGGCCG GATGGCGCGT ATCACAGGAA
GAATGGTTCA AATCAGTAGG CTTTATCAAT GACCTGAAAC TGAGAGGTTC CTATGGCACC
CTGGGTAATG ATAACGTGGG CCTGTTCCAG TATTATGATA ACTACTCCTT CAACAACCAG
TATGTGATCG GTAGTGCTAT TCAGCCGGGT ATAGACCTGA TCAAACTGGG AAATCCTAAT
ATTACCTGGG AAACAGCGAA AAAACTGGAT GTAGGTTTCA ATGCACAGGT GTTGAACCAT
TTCAACCTGG AGTTTATCTA CTTCCAGCAG AAACGTTCCG ACATTCTCGC CATGAGAAAT
GCGTCAATCC CGCAGCTGTC TGGTATTGTG AACCCGAATG GCGGTCAGCC GCTGGTACCT
TCCGAGAATC TCGGTAAAGT GAACAGCAAG GGTATTGAAG CTACCCTGGG CTATAATAAC
AAAACCAATA ATGGTATTCA TTATAATATC GGTGGTAACA TTACTTACGC CAAGAGTGAA
ATCATCTTCC TGGATGAAGC GCCTGGCACC CTGGCTTACC AGCGTATTAC CGGCAGACCG
CTGAATACTT ATCTGCTGTA CAATGCCATC GGTATTTTCA GAACAGAAGA TGACCTGAAT
AAACATCCGC ACCTGACCGG CGCTAAACCG GGTGATCTGA TATATGAAGA TTATAACCAG
GACGGTAAGA TCAATGCAGA TGATGCGACC AGGACAAAAT ATGGCAACAT TCCTGAGATT
ACCTACGGTA TCGTAATGGG CGCTGATTAT AAAGGCATCG ACCTGTCTAT CGTATTTTCC
GGACAGACGC ACGTAAGTCA GTACGTATTA CCGGAGTCGG GTACTATTGG TAACTTCTAT
AGCAGCTGGG CGGACAATCG CTGGAGTCCA GGCAATCCAA ACGGCTCCTA TCCAAGAGTA
GATGAAAGAG CTTCTTCTTC TGTCAATGGT GGTTTATATC AGAATAATTT CTGGCTGAAT
AATGCTTCTT TCCTCCGTTT GAAAAACGTG GAACTGGGCT ATAACCTGAA TGCTAATTTG
CTCTCCAGAC TGAGACTGGC TGGCGTGCGG ATCTATGCCA ATGCATTTAA CCTGTTCACC
ATTACCAAAG TGAAAGACTA TGATCCGGAA GGTAGTAGCG GCAGCGGACA ATTCTATCCA
CAGCAGCGTA TCGTGAATGC AGGCGTGAAC GTTAAATTTT AA
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| Protein sequence | MKKCLSRVVT SVSLQQWLLI LLFSLSHIPV LQAQKTSVAG RVTEGKDALP GVSVRVKGTN
QGALTNEQGR FTLTAAPGDT LVFNHMGYSP QEIIVKGGAA VNVSLVTSSQ NVNEVVVVGY
GTQKKATLTG SISVVKGSDI IKSPQPNVSN ALAGRFSGVI TNNRSGEPGY DGSNITIRGL
ATPGSNDVLI VVDGVPGQIG GLDRLDPNDI ESISVLKDAS AAVYGSRAAN GVILVTTKRG
KTGKPAISYS FNQGFSSPTR LPKMADAATY AEITNEIRYY GSPAGGMNQL YSAAEIQKFR
DGSDPLNYPN TDWQKEALKS VALQNQHNLS VSGGTDNVRY YASLGMIKQD GIYREGVTDY
HQYNFRSNID ADVTKRLKVG IYLSGRQEDR LYPQTGAGDI FRSIYRAYPT VAARYPNGLP
TSGIENNNPV LQVTDIGGTN RNPTQVFNGI LKGSYAIPGV DGLSLDGFFS VDKSWSFAKS
FSKPYAVYLY DKTANTYNKT IVGGAAGAAT LSQGQLNRSL IVSNIKLNYA RKFGKHDVNA
FIAYEQSKTA QDSMGAYRMN FPTSATPELS QGGAAATDKN NSGNSYNFTR KSYFGRIAYN
YEEKYLLEAQ ARIDGSSTFP KGNQYGFFPS ISAGWRVSQE EWFKSVGFIN DLKLRGSYGT
LGNDNVGLFQ YYDNYSFNNQ YVIGSAIQPG IDLIKLGNPN ITWETAKKLD VGFNAQVLNH
FNLEFIYFQQ KRSDILAMRN ASIPQLSGIV NPNGGQPLVP SENLGKVNSK GIEATLGYNN
KTNNGIHYNI GGNITYAKSE IIFLDEAPGT LAYQRITGRP LNTYLLYNAI GIFRTEDDLN
KHPHLTGAKP GDLIYEDYNQ DGKINADDAT RTKYGNIPEI TYGIVMGADY KGIDLSIVFS
GQTHVSQYVL PESGTIGNFY SSWADNRWSP GNPNGSYPRV DERASSSVNG GLYQNNFWLN
NASFLRLKNV ELGYNLNANL LSRLRLAGVR IYANAFNLFT ITKVKDYDPE GSSGSGQFYP
QQRIVNAGVN VKF
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