| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4546 |
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| Symbol | |
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| ID | 8360719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5678746 |
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| End bp | 5679342 |
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| Gene Length | 597 bp |
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| Protein Length | 198 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966701 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_003124189 |
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| Protein GI | 256423536 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.104822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAGAGGTA ACAGCAATAA TACTTATAGT GACCTGGAGC TGATAACGAT GCTCAAGAGA
GGTGATATGG ATGCATTTGA CATACTGTAT ACCCGACACT GGTCAGCTAT GTATCAGTCA
GCTTATTACC TTTTGCGCGA TCAGAGTGCA TGTATGGACA TAGTACAGGA CATTTTCGCC
TGGTTATGGG AGAAGCGTGA TCAACTGGAT ATACAGACGG TCCCATCATA TCTGCGCACG
GCAGTGAAGT TTAAGGTGGC CAATTATATC AGATCAGGGA ACATCAGGGA AGATTTTTAC
GAGGAATTAT CCAAACTCAC AATAGCCACG CTTCCTGGTC CTCAGGAATT GCTGGAACTG
ACTGATCTCA AAACGATCAT CCAGCAGGCG GTAACCGGTT TACCTGAAAA GTGCAGGGAG
ATATTCCTGC TCAGCCGGGA CGGCCAGTTA AGTAATCAAC AGATAGCCGA GGTACTCAAT
ATCTCCGTTA AAACGGTCGA AGCACAGAAA ACCATCGCGT TAAAGCGCAT CCGCGCAGCA
GTAGAGCCAC ATCTGCTGGC CTTGCTGATC ATCCCCTTTG TGACCTGTTA CCATTAA
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| Protein sequence | MRGNSNNTYS DLELITMLKR GDMDAFDILY TRHWSAMYQS AYYLLRDQSA CMDIVQDIFA
WLWEKRDQLD IQTVPSYLRT AVKFKVANYI RSGNIREDFY EELSKLTIAT LPGPQELLEL
TDLKTIIQQA VTGLPEKCRE IFLLSRDGQL SNQQIAEVLN ISVKTVEAQK TIALKRIRAA
VEPHLLALLI IPFVTCYH
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