| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4539 |
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| Symbol | |
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| ID | 8360712 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5662191 |
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| End bp | 5665286 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644966694 |
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| Product | AsmA family protein |
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| Protein accession | YP_003124182 |
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| Protein GI | 256423529 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.392547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00640796 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAGAA TCGCGTTGAA AACGCTGAAA ATTGTTTCGG CGTCAGTCCT GGGAATATTA
ATACTGCTTT TTTTATTACC ATTATTATTT CCCGGAGCGG TCTCCAAGAA AATAAAGACC
TGGGCCAATA ACAGCATCAG CACGGAATTG AACTTTTCAA AGGCAAGACT GTCTTTCTTT
AATCACTTTC CCTCTCTGAC GCTTACTTTG TACGATGTCA GTCTGAAAGG CTCCGCACCC
TTCGAACATG ACACCCTCGT AACCGCCAAT GCGGTTTCCC TGGGAGTGAA CCTGGGTAGC
GTCTTCTCTA AAACGCTCAG AATCGATGAG ATATACCTGA CCAAAGGTAA TATTCACGTC
CTGGTAGATG GAGAAGGGCG TCCCAACTAT AACGTCTATC AGTCATCCGC CGGGGCAAAG
GAATCGGCCG ACAGCAGCGG AGCTTCTTTA AAAATCGAAC GCATTCAGCT GGATCATTGC
GGCATTATTT ACCATGATAA ATCCCTCGGA CTATATATCC GTGCCCGTGA AGTCAATTAC
CTGGGTAAAG GTGACCTGGA GTCTTCACAG TTTGACCTGT TCTCCAAGAT CAATATTGCC
TCCCTAGATC TTTCCTATGG GGAAGTACCT TATATACAGT CTAAAAAGCT AAATGGTGAC
CTGATCACCC GTATTAATAC GAAGTCGCTG AATTTCAGCT TTGAAAGGAA TGACCTGAAG
ATTAACCAAT TGCCTGTTAA ACTGAACGGT GCGTTCAGCT TCCTCAGAAA TGGGTATAAA
ATGGATTTCA GACTCAGTTC CGGGGCTTCC ACATTAGCCG CTTTGTTCAG TGCCCTGCCG
GCTGATTATG TATCCTGGAT GGAGCAGACT GAAATAAAAG GGGATGCAGA AGTAAGTGCC
TCATTGACAG GTAACTATAT CGCGAAGACG AATAAAATGC CTGACTTCAG CTTTAATATT
AAGGTAAGGG ACGGCGTGAT CGCACATACC GGCGCTTCCA GTAAAGTACA ACAGTTACGA
CTTGATTTTC AGACGAAACT GCCGCAGATG AATACAGAGA AATTCTATGT GAGTCTTGAT
TCTCTGTACT TTACACTGGA TAAAGGCTTT TTCAGTTCAT CGATGAATAT GACAGGTCTC
TACAGACCTG ACATCCACGC CCGCATGGAA GCAGACATTG ATATGCAGCA ATGGGGGGAA
GCGATGGGTT GGGATAAATT CGATCTGAAA GGACAGTTCC ATGCACACCT GAAAGCCGAT
GGCCGCTATA TACAATATGC AGTGAATAAT GGTCCGGGAC ATGAATCAGA TGTGGCTATC
AGCAGCATCC CTGCGTTTGA TTTCAGTTCC AGTCTCACGA ATGGGTATAT CAAGTTTGAC
AAGGTCAGGG AACCTGTTCA CAATATCGCA TTTGATGTAA AAGCAAACTG TCCGGATAAT
AACTATGCCA ACATCCGGGT GGACGTTAGC AAGCTGAATG CGGAAGTGCT CAATAACTAT
ATTAAAGGAT ACCTCTTGCT CGCGAATGGG CAGCAGCCAC AGGTAGATGC GAATCTGAAG
GCCGTACTGC ACATGGCGGA TGTGGAGAAA TTCTATCCGC TGGATGGTAT CGATCTGAGT
GGTGATCTGA ATATCAATAT CTTAAGTAAA GGTATTTATA AACCTGCGGC AAGCCTGTTC
CCGGTAACCA CGGCAGCACT GCACATGAAT AACGGTACCC TGCAAACGAA ATACTACAAA
CATCCTATTG AAAAGATCAA TGTGAATGCG GTACTGACAG ATACCTCCGG TAGTTTGCAG
TCCCTGAAAG TAGATATCAA ACCAGTCTCT TTTGCCTTTG AAGGTCAGAC ATTTACACTG
AAAGCAGCCC TGGATAATTT TGACAACTTA CGCTATAATA TCCTGGCCAG CGGTATCATT
GATCTGGGGC GTATTTATAA AGTACTAGGC AAGGAAGGCT ATGATGTAGA AGGCATGATC
AAAACAGATC TTTCCTTACA GGGTACACAG GCAGATGCCA TGAGCGGACA ATACGCCAAT
CTCAATAATA AAGGTTCGCT GACTGTCAGA GATGTCACCA TCACGGCTGC CCGTTTCCCT
TTACCCTTCC ATATCGAAAA CGGTGTATTC CGCTTTGAAG AAGACAAGAT GTGGTTTGAC
AAATTCGACC TCCGTTATGG TCAGTCGGAT ATCCAGTTGA ATGGTCATCT GTATAACCTG
ATCGGCTACG CCACACAGAA GAACCAGCAA CTAAGAGGGG CGTTCAGCCT GAAAAGTAAT
TACCTGCTGG CTGATGAATT AAAATCATAT GGTCAGGAGG AATCAGACGG TACACCAGAG
CCTCCGCATG TAGTCAATAT ACCTGCTAAT CTCTCATTAT CGCTAACGGC AAATGCGGAA
AAAGTACGTT TTAGTGGCAT AGATATCAGC AAATTCCATG GTCAGTTGCT GGTGGATAAT
GGTAGTCTGC AACTAAACAA AACCGGCTTT AGTATCATCG GCGCTCCGGT AGCGATGGAT
GCTGTGTACA CACCGCTCAG TGAACAATCA GCTGCTTTTG ATTACCGTAT CAATGCGAGA
CAGTTTGATA TTAAACGCGC CTACAATGAG ATCAGGCTGT TTCATGATAT GGCGACTTCA
GCAGGTGCGG CAAGTGGTAT CGTCGGACTG GATTATCATG TCAACGGCCG GCTGGATGAA
AACATGCACA TTGTTTATTC TTCCTTGAAA GGAGAGGGGG TGTTGTCGCT GAAGAAAATA
AAAGTCAAAG GATTCAGGAT GTTGAATGCC GTAGGTAATA CCACCAACCG CAAAGACATT
AAAGATCCCA GTTTGTCAGA AGTAGATATC CGTTCTTCTA TTGCAAACAA CATCATTACT
ATTGAACGCA CTAAATTGCG TATTGCTGGT TTCAGGCCGC GTTTTGAAGG ACAGGTCAGC
TTTGATGGCC GCCTGAATAT GAAAGGACGC GTCGGATTAC CGCCGTTTGG TATTCTGGGT
ATTCCTTTCA ATGTGACAGG TACACAAAAG AATCCGGTAG TGAAATTGAA ACGTGGCAAT
GCGAAGGATT CGCTGGATAG AGAGGACGCT GAATAA
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| Protein sequence | MKRIALKTLK IVSASVLGIL ILLFLLPLLF PGAVSKKIKT WANNSISTEL NFSKARLSFF
NHFPSLTLTL YDVSLKGSAP FEHDTLVTAN AVSLGVNLGS VFSKTLRIDE IYLTKGNIHV
LVDGEGRPNY NVYQSSAGAK ESADSSGASL KIERIQLDHC GIIYHDKSLG LYIRAREVNY
LGKGDLESSQ FDLFSKINIA SLDLSYGEVP YIQSKKLNGD LITRINTKSL NFSFERNDLK
INQLPVKLNG AFSFLRNGYK MDFRLSSGAS TLAALFSALP ADYVSWMEQT EIKGDAEVSA
SLTGNYIAKT NKMPDFSFNI KVRDGVIAHT GASSKVQQLR LDFQTKLPQM NTEKFYVSLD
SLYFTLDKGF FSSSMNMTGL YRPDIHARME ADIDMQQWGE AMGWDKFDLK GQFHAHLKAD
GRYIQYAVNN GPGHESDVAI SSIPAFDFSS SLTNGYIKFD KVREPVHNIA FDVKANCPDN
NYANIRVDVS KLNAEVLNNY IKGYLLLANG QQPQVDANLK AVLHMADVEK FYPLDGIDLS
GDLNINILSK GIYKPAASLF PVTTAALHMN NGTLQTKYYK HPIEKINVNA VLTDTSGSLQ
SLKVDIKPVS FAFEGQTFTL KAALDNFDNL RYNILASGII DLGRIYKVLG KEGYDVEGMI
KTDLSLQGTQ ADAMSGQYAN LNNKGSLTVR DVTITAARFP LPFHIENGVF RFEEDKMWFD
KFDLRYGQSD IQLNGHLYNL IGYATQKNQQ LRGAFSLKSN YLLADELKSY GQEESDGTPE
PPHVVNIPAN LSLSLTANAE KVRFSGIDIS KFHGQLLVDN GSLQLNKTGF SIIGAPVAMD
AVYTPLSEQS AAFDYRINAR QFDIKRAYNE IRLFHDMATS AGAASGIVGL DYHVNGRLDE
NMHIVYSSLK GEGVLSLKKI KVKGFRMLNA VGNTTNRKDI KDPSLSEVDI RSSIANNIIT
IERTKLRIAG FRPRFEGQVS FDGRLNMKGR VGLPPFGILG IPFNVTGTQK NPVVKLKRGN
AKDSLDREDA E
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