Gene Cpin_4537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4537 
Symbol 
ID8360710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp5660365 
End bp5660958 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content44% 
IMG OID644966692 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003124180 
Protein GI256423527 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.340013 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0119033 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGG GTAAAAATAC AAGGCAGTTC ATTATTGAGC AGACAGCGCC GCTTTTTAAT 
ACAAAAGGGG TAGCAGCGAC AGCGATCACG GATATTATGG AAGTGACGAA TCTGGCAAAA 
GGCAGTCTTT ATGTGCATTT TGCCAACAAG GAAGAACTGG CTTATTGTGC AGTAGATTAT 
AACCTCCAGC AATTCGTAGA GAAAACCGGT GCAGAGGCAC AGAAATATAG CGGTGCAAAA 
GAAAAGTTTT TTGCCTTACT CGACTATCTG GGCGACCCGT TGAACCCTCC TGTAAAAGGT 
GGTTGTCCGA TGATGAATTT TGGGATGGAA GCAGATGATA CCAATCCTGT GATCAGGGAG 
AAAGTATACA ACACCATCTG TACGGTACAA CAGGCAATGA CTGATATCGT AGAACAAGGT 
ATTGCAGAAG GTACATTCAA TAAAGACTGG GATGTAAAGG TCTTTGTGAC GAAAGCCTAT 
GCGATGATAG AAGGAGGCAT CCTGGTATCC AGGGTATCAG GGAACAGCGA TCAGATGAAC 
CTGCTGGTGG GTCTGTTAAA GGCTGAAATA GCGGCACAGG TGATTAAAAG CTAA
 
Protein sequence
MSKGKNTRQF IIEQTAPLFN TKGVAATAIT DIMEVTNLAK GSLYVHFANK EELAYCAVDY 
NLQQFVEKTG AEAQKYSGAK EKFFALLDYL GDPLNPPVKG GCPMMNFGME ADDTNPVIRE 
KVYNTICTVQ QAMTDIVEQG IAEGTFNKDW DVKVFVTKAY AMIEGGILVS RVSGNSDQMN 
LLVGLLKAEI AAQVIKS