Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4532 |
Symbol | |
ID | 8360705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 5650790 |
End bp | 5653951 |
Gene Length | 3162 bp |
Protein Length | 1053 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644966687 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003124175 |
Protein GI | 256423522 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.171577 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0460383 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAATC ATTTACCTCC TCCAAAGGGA ACGGGGGTAC GATGGCTCCA TGCCAGAAGT ATCCTGCATG CCCTTATCCT CACTGCAGGA TCCATTACAA GCGCCACAGC GAACAATGCT CCGGAAACTG TCCTCGTGTA TTTCCAGGAC AATGGTACAC AACAGCAACA AACCATTACC GGACAGGTTA CTGACGCCAC CAATCAACCT TTGCCAGGTG TCAGCGTATC ACTCAAAGGC GCCTCCACAG GTACTGTCAC CAACGCCAGC GGGCACTATA CCCTGAAAGT GAATACGACA AAAGGGATAC TCGTATTTTC CTCTATGGGT TATGCTAAAA AGGAAGTCCC CTTCTCCGGC GCATCCAGCT TAAATATCAT CCTGGAATCA GATCAGAAAG CGTTGGGTGA AGTCGTGGTA GTAGGCTACG GTACACAAAA GAAAGTAAAC ATGGTAGGCG CCGTATCTGC TGTAAAAGTA GATGAAAAGA TCACCAGCCG TTCCCTGCCG AATACCTCTT CTGCATTATC GGGTCTGGTG CCCGGACTCT CTGTTACCCA GAATTCCGGT ATGGCGGGTA ACAATTCCTC CAGCCTCATT ATCCGTGGGC TTGGTACGGT TAATAATAGT AGTCCGCTGG TAGTAGTAGA CGGTATGCCC GATGTAGACA TTAACCGTAT CAACATGAAC GATATCGAGA GCATCTCCGT ACTCAAAGAT GCCACCTCGG CTTCTGTATA TGGTTCGAGG GCTGCCAACG GCGTTATTCT CATCACCACC AAATCGGGGA AAGGACAAAA AAAGACGACG ATTAATTTTT CGGGTGGTTA TGGGGTAGAA GTACCGACGC GTTCCTATGA ATTTATGGCT GATTATGCCA GGGCATTGAC CCTGCACCAG CGTGCCGCAG CTGTCAATAC ACTCCGCTCC AATTACAACT TTAAAGATGG TACGATCGAT CAGTGGATGG CGATGGGTAT GATCGATCCT TTACGTTATC CTAATACGGA CTGGTGGGAT GTGATACTCC GCGAAGGTGT GATACAGAAC TATAATCTGT CCGCCTCCGG AGGAACAGAG AATTCCAATT TCTTCATGTC TCTCGGCGTA ATGGATGAAA GGGGGCTCCA GATCAATAAC GACTATAAAC GTTACAATGC CCGCTTCAAC TACGATAATA AACTCCGGAA GAACATGAAT GCAGGGCTGC GTTTCAATGG TAACTGGTCT AAATACCAGT ATGCACTCGC GGATGGTTAT ACCGATGACG ATGCTTCTAA TACCGCCGGA TTTGACCTGC AATACGCTAT TGCCGGTATT ACGCCTTATG ATCCTGTAAG TGGTTATTAT GGTGGTGTAA TGGCTTATAA TGAAGATCCG CAGGCATATA ATCCCTACAC CGTTTACCAG AACATGCTGA ACCGCCAGAA CAGACAGGAA GCCAACGCTA CGGCATACCT GGATTGGGAA CCGATTAAAG GACTGACGGG TCGTGTGGAT TATACCCTGA ATTATTACAA CCAGTTCCGC TGGAATGCCA ATAATCCTAA CCGTGCCTAT AACTTCCAGA CTGTCAGCTA TGGCAGCCGT GTATATGTAG GTGACAATGC CGGTATCGGC AACTTTACCA ATACAGGATA CAAGACCATG CTGAATGGGC GTATCACCTA CCACAAGACA TTTGGCGTCA ACCATGATTT CACCGCTTTA GGCGTATACA GTGAAGAATT CTGGTATGAC CGTTACCAGG GTACTTCCAG GAATGACAGA CTGTATCCTA CACTGCATGA AGTAGATGCT GCTCTCACGG ATATACAATC CACAGGTGGT AATTCCAGCA CGGAAGGCTT ACGTTCCTAT ATCGGTCGTA TCAATTATAC CGCTTTCAAT AAATATCTCT TCGAAGCCAA TTTCCGTTAT GACGGTTCCT CCCGCTTCCT GCCCGGTCAG CAGTATGGGT TCTTTCCTTC TGTAGCGGTG GGATGGCGCT TTACAGAAGA GAAATTCGTC AATCGGCTTA CCCGTCGCTT CCTGAGTAAT GGTAAGTTCC GCGCTTCTTA CGGCGGACTG GGTAACAACT CCGGTGTAGG TCGTACAGAG CAACAGGCAA CACTGGCTGC CAGTCACTAT ATGATCGACG GGACTATTGC CAAAGGTTTT GTAAATCAGA AAATGGTAAA CAAAGACTTG TCCTGGGAGT CTACCCGCGT ACTGAACCTC GGTCTGGATC TGGGCTTTGC AGACAATCAC CTGAATGCTG AAATCGACTA TTACAACCGT CTTACCACAG GTATGAACCG CCCCTCAGAA ATGTCTGTAC TGCTGACCGG CGCTTACAAT GCACCGCGTA AGAATATCGG CGATCTGCGT AACCAGGGTA TTGAATTAAA CCTGACCTGG TCTGACAGGG TAGGACAACT CAGTTATGGC ATCAACCTGA ATGGTTCCTA TAACATCACG ACACTTGAAA AATGGAATGA ATTCCTGAAC AGGGGATGGA CCTTCCTGAA TATGCCTTAC CACTTCCTGT ATACTTATGA AGATAAAGGG ATCGCACAGA CCTGGCAGGA TGTATATAAC AACACGCCGC AGGGTGCTTC CCCAGGTGAT CTGATCCGTA AAGACCTGAA TGGCGACGGC CGTATTGACG GCAACGACAT GAAGGCGTAT CCCAATGTAC AAAGAGACAG ACCTACCACT ATTCTTGCCC TGAATACGAC TTTCTCCTGG AAAGGTATTG ACCTGGGTTT CCTCATAACC GGTGCGACCG GTCGTAAGGA CTACTGGATC AACAACTACA ATAACATCAA CTTTGGGGCA CAACGTTATG CGTCTACCTG GGATCACTGG AATAATCCAT GGTCAGTGGA AAACCGCAAC GGTGAATGGC CCAGACTTAG CGGCAGCAAC AACCGTGTGG AGACGACCTT CTGGCTGGAT GACCTGAGTT ATATCCGTTT CAAAAACATT CAGCTGGGAT ACAATCTTCC TAAAGAACTG CTGAGCAGGA TCGGTTTGAA TAACTGTCGT ATCTATTGCT CTTCCGAAAA CCTCTTCACC ATTACCTCTT TCCGTGGTCT TGATCCCGAG CTGAATGGCA ACAGGAGCAA TGCTTATCCG CTGAACAGGA CTTATGGCGC AGGATTGAAC ATCGGTTTAT AA
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Protein sequence | MINHLPPPKG TGVRWLHARS ILHALILTAG SITSATANNA PETVLVYFQD NGTQQQQTIT GQVTDATNQP LPGVSVSLKG ASTGTVTNAS GHYTLKVNTT KGILVFSSMG YAKKEVPFSG ASSLNIILES DQKALGEVVV VGYGTQKKVN MVGAVSAVKV DEKITSRSLP NTSSALSGLV PGLSVTQNSG MAGNNSSSLI IRGLGTVNNS SPLVVVDGMP DVDINRINMN DIESISVLKD ATSASVYGSR AANGVILITT KSGKGQKKTT INFSGGYGVE VPTRSYEFMA DYARALTLHQ RAAAVNTLRS NYNFKDGTID QWMAMGMIDP LRYPNTDWWD VILREGVIQN YNLSASGGTE NSNFFMSLGV MDERGLQINN DYKRYNARFN YDNKLRKNMN AGLRFNGNWS KYQYALADGY TDDDASNTAG FDLQYAIAGI TPYDPVSGYY GGVMAYNEDP QAYNPYTVYQ NMLNRQNRQE ANATAYLDWE PIKGLTGRVD YTLNYYNQFR WNANNPNRAY NFQTVSYGSR VYVGDNAGIG NFTNTGYKTM LNGRITYHKT FGVNHDFTAL GVYSEEFWYD RYQGTSRNDR LYPTLHEVDA ALTDIQSTGG NSSTEGLRSY IGRINYTAFN KYLFEANFRY DGSSRFLPGQ QYGFFPSVAV GWRFTEEKFV NRLTRRFLSN GKFRASYGGL GNNSGVGRTE QQATLAASHY MIDGTIAKGF VNQKMVNKDL SWESTRVLNL GLDLGFADNH LNAEIDYYNR LTTGMNRPSE MSVLLTGAYN APRKNIGDLR NQGIELNLTW SDRVGQLSYG INLNGSYNIT TLEKWNEFLN RGWTFLNMPY HFLYTYEDKG IAQTWQDVYN NTPQGASPGD LIRKDLNGDG RIDGNDMKAY PNVQRDRPTT ILALNTTFSW KGIDLGFLIT GATGRKDYWI NNYNNINFGA QRYASTWDHW NNPWSVENRN GEWPRLSGSN NRVETTFWLD DLSYIRFKNI QLGYNLPKEL LSRIGLNNCR IYCSSENLFT ITSFRGLDPE LNGNRSNAYP LNRTYGAGLN IGL
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