Gene Cpin_4532 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4532 
Symbol 
ID8360705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5650790 
End bp5653951 
Gene Length3162 bp 
Protein Length1053 aa 
Translation table11 
GC content48% 
IMG OID644966687 
ProductTonB-dependent receptor plug 
Protein accessionYP_003124175 
Protein GI256423522 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.171577 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0460383 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTAATC ATTTACCTCC TCCAAAGGGA ACGGGGGTAC GATGGCTCCA TGCCAGAAGT 
ATCCTGCATG CCCTTATCCT CACTGCAGGA TCCATTACAA GCGCCACAGC GAACAATGCT
CCGGAAACTG TCCTCGTGTA TTTCCAGGAC AATGGTACAC AACAGCAACA AACCATTACC
GGACAGGTTA CTGACGCCAC CAATCAACCT TTGCCAGGTG TCAGCGTATC ACTCAAAGGC
GCCTCCACAG GTACTGTCAC CAACGCCAGC GGGCACTATA CCCTGAAAGT GAATACGACA
AAAGGGATAC TCGTATTTTC CTCTATGGGT TATGCTAAAA AGGAAGTCCC CTTCTCCGGC
GCATCCAGCT TAAATATCAT CCTGGAATCA GATCAGAAAG CGTTGGGTGA AGTCGTGGTA
GTAGGCTACG GTACACAAAA GAAAGTAAAC ATGGTAGGCG CCGTATCTGC TGTAAAAGTA
GATGAAAAGA TCACCAGCCG TTCCCTGCCG AATACCTCTT CTGCATTATC GGGTCTGGTG
CCCGGACTCT CTGTTACCCA GAATTCCGGT ATGGCGGGTA ACAATTCCTC CAGCCTCATT
ATCCGTGGGC TTGGTACGGT TAATAATAGT AGTCCGCTGG TAGTAGTAGA CGGTATGCCC
GATGTAGACA TTAACCGTAT CAACATGAAC GATATCGAGA GCATCTCCGT ACTCAAAGAT
GCCACCTCGG CTTCTGTATA TGGTTCGAGG GCTGCCAACG GCGTTATTCT CATCACCACC
AAATCGGGGA AAGGACAAAA AAAGACGACG ATTAATTTTT CGGGTGGTTA TGGGGTAGAA
GTACCGACGC GTTCCTATGA ATTTATGGCT GATTATGCCA GGGCATTGAC CCTGCACCAG
CGTGCCGCAG CTGTCAATAC ACTCCGCTCC AATTACAACT TTAAAGATGG TACGATCGAT
CAGTGGATGG CGATGGGTAT GATCGATCCT TTACGTTATC CTAATACGGA CTGGTGGGAT
GTGATACTCC GCGAAGGTGT GATACAGAAC TATAATCTGT CCGCCTCCGG AGGAACAGAG
AATTCCAATT TCTTCATGTC TCTCGGCGTA ATGGATGAAA GGGGGCTCCA GATCAATAAC
GACTATAAAC GTTACAATGC CCGCTTCAAC TACGATAATA AACTCCGGAA GAACATGAAT
GCAGGGCTGC GTTTCAATGG TAACTGGTCT AAATACCAGT ATGCACTCGC GGATGGTTAT
ACCGATGACG ATGCTTCTAA TACCGCCGGA TTTGACCTGC AATACGCTAT TGCCGGTATT
ACGCCTTATG ATCCTGTAAG TGGTTATTAT GGTGGTGTAA TGGCTTATAA TGAAGATCCG
CAGGCATATA ATCCCTACAC CGTTTACCAG AACATGCTGA ACCGCCAGAA CAGACAGGAA
GCCAACGCTA CGGCATACCT GGATTGGGAA CCGATTAAAG GACTGACGGG TCGTGTGGAT
TATACCCTGA ATTATTACAA CCAGTTCCGC TGGAATGCCA ATAATCCTAA CCGTGCCTAT
AACTTCCAGA CTGTCAGCTA TGGCAGCCGT GTATATGTAG GTGACAATGC CGGTATCGGC
AACTTTACCA ATACAGGATA CAAGACCATG CTGAATGGGC GTATCACCTA CCACAAGACA
TTTGGCGTCA ACCATGATTT CACCGCTTTA GGCGTATACA GTGAAGAATT CTGGTATGAC
CGTTACCAGG GTACTTCCAG GAATGACAGA CTGTATCCTA CACTGCATGA AGTAGATGCT
GCTCTCACGG ATATACAATC CACAGGTGGT AATTCCAGCA CGGAAGGCTT ACGTTCCTAT
ATCGGTCGTA TCAATTATAC CGCTTTCAAT AAATATCTCT TCGAAGCCAA TTTCCGTTAT
GACGGTTCCT CCCGCTTCCT GCCCGGTCAG CAGTATGGGT TCTTTCCTTC TGTAGCGGTG
GGATGGCGCT TTACAGAAGA GAAATTCGTC AATCGGCTTA CCCGTCGCTT CCTGAGTAAT
GGTAAGTTCC GCGCTTCTTA CGGCGGACTG GGTAACAACT CCGGTGTAGG TCGTACAGAG
CAACAGGCAA CACTGGCTGC CAGTCACTAT ATGATCGACG GGACTATTGC CAAAGGTTTT
GTAAATCAGA AAATGGTAAA CAAAGACTTG TCCTGGGAGT CTACCCGCGT ACTGAACCTC
GGTCTGGATC TGGGCTTTGC AGACAATCAC CTGAATGCTG AAATCGACTA TTACAACCGT
CTTACCACAG GTATGAACCG CCCCTCAGAA ATGTCTGTAC TGCTGACCGG CGCTTACAAT
GCACCGCGTA AGAATATCGG CGATCTGCGT AACCAGGGTA TTGAATTAAA CCTGACCTGG
TCTGACAGGG TAGGACAACT CAGTTATGGC ATCAACCTGA ATGGTTCCTA TAACATCACG
ACACTTGAAA AATGGAATGA ATTCCTGAAC AGGGGATGGA CCTTCCTGAA TATGCCTTAC
CACTTCCTGT ATACTTATGA AGATAAAGGG ATCGCACAGA CCTGGCAGGA TGTATATAAC
AACACGCCGC AGGGTGCTTC CCCAGGTGAT CTGATCCGTA AAGACCTGAA TGGCGACGGC
CGTATTGACG GCAACGACAT GAAGGCGTAT CCCAATGTAC AAAGAGACAG ACCTACCACT
ATTCTTGCCC TGAATACGAC TTTCTCCTGG AAAGGTATTG ACCTGGGTTT CCTCATAACC
GGTGCGACCG GTCGTAAGGA CTACTGGATC AACAACTACA ATAACATCAA CTTTGGGGCA
CAACGTTATG CGTCTACCTG GGATCACTGG AATAATCCAT GGTCAGTGGA AAACCGCAAC
GGTGAATGGC CCAGACTTAG CGGCAGCAAC AACCGTGTGG AGACGACCTT CTGGCTGGAT
GACCTGAGTT ATATCCGTTT CAAAAACATT CAGCTGGGAT ACAATCTTCC TAAAGAACTG
CTGAGCAGGA TCGGTTTGAA TAACTGTCGT ATCTATTGCT CTTCCGAAAA CCTCTTCACC
ATTACCTCTT TCCGTGGTCT TGATCCCGAG CTGAATGGCA ACAGGAGCAA TGCTTATCCG
CTGAACAGGA CTTATGGCGC AGGATTGAAC ATCGGTTTAT AA
 
Protein sequence
MINHLPPPKG TGVRWLHARS ILHALILTAG SITSATANNA PETVLVYFQD NGTQQQQTIT 
GQVTDATNQP LPGVSVSLKG ASTGTVTNAS GHYTLKVNTT KGILVFSSMG YAKKEVPFSG
ASSLNIILES DQKALGEVVV VGYGTQKKVN MVGAVSAVKV DEKITSRSLP NTSSALSGLV
PGLSVTQNSG MAGNNSSSLI IRGLGTVNNS SPLVVVDGMP DVDINRINMN DIESISVLKD
ATSASVYGSR AANGVILITT KSGKGQKKTT INFSGGYGVE VPTRSYEFMA DYARALTLHQ
RAAAVNTLRS NYNFKDGTID QWMAMGMIDP LRYPNTDWWD VILREGVIQN YNLSASGGTE
NSNFFMSLGV MDERGLQINN DYKRYNARFN YDNKLRKNMN AGLRFNGNWS KYQYALADGY
TDDDASNTAG FDLQYAIAGI TPYDPVSGYY GGVMAYNEDP QAYNPYTVYQ NMLNRQNRQE
ANATAYLDWE PIKGLTGRVD YTLNYYNQFR WNANNPNRAY NFQTVSYGSR VYVGDNAGIG
NFTNTGYKTM LNGRITYHKT FGVNHDFTAL GVYSEEFWYD RYQGTSRNDR LYPTLHEVDA
ALTDIQSTGG NSSTEGLRSY IGRINYTAFN KYLFEANFRY DGSSRFLPGQ QYGFFPSVAV
GWRFTEEKFV NRLTRRFLSN GKFRASYGGL GNNSGVGRTE QQATLAASHY MIDGTIAKGF
VNQKMVNKDL SWESTRVLNL GLDLGFADNH LNAEIDYYNR LTTGMNRPSE MSVLLTGAYN
APRKNIGDLR NQGIELNLTW SDRVGQLSYG INLNGSYNIT TLEKWNEFLN RGWTFLNMPY
HFLYTYEDKG IAQTWQDVYN NTPQGASPGD LIRKDLNGDG RIDGNDMKAY PNVQRDRPTT
ILALNTTFSW KGIDLGFLIT GATGRKDYWI NNYNNINFGA QRYASTWDHW NNPWSVENRN
GEWPRLSGSN NRVETTFWLD DLSYIRFKNI QLGYNLPKEL LSRIGLNNCR IYCSSENLFT
ITSFRGLDPE LNGNRSNAYP LNRTYGAGLN IGL