Gene Cpin_4506 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4506 
Symbol 
ID8360679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5614139 
End bp5617630 
Gene Length3492 bp 
Protein Length1163 aa 
Translation table11 
GC content47% 
IMG OID644966661 
Producthypothetical protein 
Protein accessionYP_003124149 
Protein GI256423496 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.521231 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCTA CAGGTGTTAA ACTCCTGCTT ATTACCATAT CTTTCTTTTG TGTTTTTTCC 
TCTGCCAGCG CAGCCATATT TACTGTCACT ACGCAGGCAG ACAGCGGCCC CGGATCACTA
AGAGATGCAA TTACCAAAGC TAACAGCAAC GGTACAACTG AGAAAGATTA TATCTATTTT
AATATTTCGG TGACATCGCC GTTAAGACCT GTTATTGTCA TTAACAGCGA CCTGCCGGCG
CTGAGTAGTA ACATCGTGGT AGATGCATCT ACACAGGCAT CCACCGTATA CGGTGTCAGT
ACTGCCAGGG TACAGCTGCT ACGTAATAAT GACCAGGCGA CATTTTATGG CCTTAGAATA
GACAACGCTT CAGATGTGGA GATCTACGGA CTCGTAATCG CCACTGGCGG AGTGGCTGGT
GAAAGCTATG GTATTCAGAT CAGTGGAACC TGTTCGGATA TTATTATCGG AGGGAATGCT
AAAGGCAATG TGATTTATGG GTTTAAGTTC GGGATCTATG GTGTAGCGCC CAATACGGAC
CCTAAAACCA TCAGCAATCT GACTATACAG AATAACATTA TCGGTATGCG GGAAGACGGC
GTAATTGCAG CTGACGCATA TTCCTGTTAT CAGCCTGTGC TGGTAACACA CCTGAATGGT
GTAACATTTG GTGGTAACAG GGCTGATCTG GGAAATATTA TTGCCGGTAC TACTTATGGT
GTTTATCTTT CTGCGGATGC AGGGGATGTG GCAGCTACTT TTAATAAGAT CGGGACGGAT
GTCAGTGGAA CTGCTGGGAC AGCGTCTTAT CTTTTCAGAG ACGATTATAT AGCGATTGCC
GGTGCTACAA ACGGGATCGT TACAGTGGCA GATAACCTGA TAGCAGGACA GAGTGTTTAC
GGACTGGGAT TGTATGGTTT GCGCAATGGC ACTTTCCGGG TGCAACGCAA TAAAATAGGG
ACGGAAATTA CTGGTACAGC GGTACTCGGA CAACGTTCTT CCGGCATCCG GCTGACCGAT
TGTATGAGGG GCGTAATCGG CGGTACACTA TTGGATAAAA ACATCATTGC CGGCTGTTAT
GATGTGCCGG TGGTCGTTGT GTCTACTTAT CAGGCGACAA TATCGCAGAA TGAGATGTTC
TGTAACAATA ATACTTCTAT TGTAACAGGA CCTGCTAATA GTATACAATT ACTGAACTGG
AATCCTGCTG ATGGGAAAGC AAAGCCTTTT GTACGGGTGC TGACCTGTAA TGCTACCACC
ATCACCGGGA TAGCTACGCC AAATGCTAAA ATGGAGGCTT TTATTCCTTA CAGATGTGGT
AACGGACGTA AGTGTGATGG CCGTAATTAT ATTGAAACAT TTTTAGCCGG TGCAGATGGT
AAATGGACCT ATGCACTGAA AGGCCGTGAC GGTGTAATCT TCTCCGCCAC TGATGCTACC
GGCGCTACCT CCGATTACAG TAATCCGGTA TGGAGTGATG ATATTGAAAA TAATATTGTA
CATACGGCCT GTGGAGAAAG TACCGGACGT ATTATCAACA AGATTTTATA CAACGCAACA
CCTTTTCACT GGGAAGATGA AAACGGAAAT ACAGTTGGTA CAGATACTTC TTTGCTGAAT
GTGCCGGCAG GTAGATACCG CCTGGTAATG TATGGCGCGG GATGTAACAA ACCGGAGTGC
GTTGAGTATT CACCTTTCTT TGAGGTAAAA GATATAAGTC CTGTGATTCA GACAGGTACT
ATGACGATCA TTCCTGCCAG ATGTGGCGTT AATAACGGCA GCATCACAGG CCTCCAGTTC
CAGGGTATTA ACCTGAAATA CAACTGGTAT AATGTCAATA TGCCCGCTGT AAGTATTGGC
GCTGGCCCGA CTATTAATAA CCTTGCCCCC GGCAACTATA ATATCACCAT TACAGACACG
ATTAACGGTT GTACGGCAAC CGGCGGACCT TTTGAAATTA GCGCTGTAAA TGCACCGGTG
CTCAACCTGA GCACCGTGCA ATTGCAGAAC GCAGTTTGTA GTCAGCCGAC AGGTAGTATC
ACCGGACTAG TCGTAAACGG TACCGGTACG ATCACCTATA CCTGGACCGA TGCCACCGGA
CAAACCGTAG GGAATACCGC GCAGCTGACC AATGTTCCTG CTGGTACCTA TACACTTGCT
TTTTCTGATC AATCTGGCTG TCCGGCAGCA GGACCTTCAC AGCCATTTGT CATCACCGCA
CCGGGAGAGA TCCTGATTGA CCGTAGTACG GCTATCATCG GAGAAGCATC CTGTACGGTG
AATGATGGTA GTATCACAGG CTTACAGGCC ACTAATGCGG AAACTACCCG CTGGATGGAC
GATAATGGTA CCGTGATCGG TACTGGTCTT AATCTGACGA ATCTGGCCCC TGGCAATTAT
CGCCTGGAGA TTTCAAATAC CTATGGCTGT AACGTTACAA CAGATTTTGA TGTACCGCAG
CATGAACCTG ACCTGATCAC GGTTTCACAG TTAAATACGC AGAATCCGGT TTGTAACCTG
AACAATGGTA GTGTCACAGG TATGATCCTG GCAGGAGGGA CGCCCGCCAG TTACCGTTGG
CTGAATATGA ATGATATGGA AGTGAGCACG GTAAAAGACC TGACCAATGC AGGCGATGGT
ATTTACAGAT TGTATGTAAA AGATATTGAA CAATGTGAGC AGCTGGTTGC TACCATTATC
CTGAAAACAC CCAATCTGCC GCGTATAGAT GCTACTTATC TGTCTATTAT CGATGACGTT
TGCAGTATGA CCTCCGGTGC TATTGCCGGT CTGGGTGTCA ATGGGAAGGA ACCGCTGTCT
TATGCATGGC TGACTCCTGA CAGTACGGTT ATTTCTACCT CTTTACAGGC ACAATCGTTG
CCTGGAGGAT ATGACTATAC GTTGCGGGTA ACAGACGCCT ATGGTTGCGT CGTATACAGT
GATCCTTTAC CTGTAAACGC AGTGGACATT TTGCTGCTGG CTCCGACGGT AAAAGATGTC
GTGATCATGA AGGGAATGAC CGCCGATATC AAAGTAACCA ACCTGCACCA GGGTAGTTAT
AATCTCTTCC GTCCGGGCAC AGAATGGTCT GAAACAAATA CAACAGGAGA ATTCAGCGTA
ACAGATATCA CGGGTAGTAC GACTTTTGGT ATTAATTATC AGTTTGGGGA ATGTGTGAGT
CCGACGACCT ACTTCAAGGT CGATATCATC GATGCGGTGA AAGTATACGC GCCTACCGCT
TTCTCTCCTA ATGGCGACGG GCATAACGAC ATCTTCAGAC CCAAAGGGAT AGGAGTGGCT
ACTTATAGTC TGTTTACCGT AATGGACCGC TGGGGCAACA GTGTATATAC CGCTAAAGAT
GTCAGCACCG GATGGGATGG CACCTTCCGT GGTAAAAAAG TAGATGCCGG GGCTTATGTG
TGGTTGCTGC AGGGAATTGA TATTCTGGGG CAGCCCGTAC AGGAGAAAGG AGCTGTTCTG
GTGGTCTACT AG
 
Protein sequence
MKPTGVKLLL ITISFFCVFS SASAAIFTVT TQADSGPGSL RDAITKANSN GTTEKDYIYF 
NISVTSPLRP VIVINSDLPA LSSNIVVDAS TQASTVYGVS TARVQLLRNN DQATFYGLRI
DNASDVEIYG LVIATGGVAG ESYGIQISGT CSDIIIGGNA KGNVIYGFKF GIYGVAPNTD
PKTISNLTIQ NNIIGMREDG VIAADAYSCY QPVLVTHLNG VTFGGNRADL GNIIAGTTYG
VYLSADAGDV AATFNKIGTD VSGTAGTASY LFRDDYIAIA GATNGIVTVA DNLIAGQSVY
GLGLYGLRNG TFRVQRNKIG TEITGTAVLG QRSSGIRLTD CMRGVIGGTL LDKNIIAGCY
DVPVVVVSTY QATISQNEMF CNNNTSIVTG PANSIQLLNW NPADGKAKPF VRVLTCNATT
ITGIATPNAK MEAFIPYRCG NGRKCDGRNY IETFLAGADG KWTYALKGRD GVIFSATDAT
GATSDYSNPV WSDDIENNIV HTACGESTGR IINKILYNAT PFHWEDENGN TVGTDTSLLN
VPAGRYRLVM YGAGCNKPEC VEYSPFFEVK DISPVIQTGT MTIIPARCGV NNGSITGLQF
QGINLKYNWY NVNMPAVSIG AGPTINNLAP GNYNITITDT INGCTATGGP FEISAVNAPV
LNLSTVQLQN AVCSQPTGSI TGLVVNGTGT ITYTWTDATG QTVGNTAQLT NVPAGTYTLA
FSDQSGCPAA GPSQPFVITA PGEILIDRST AIIGEASCTV NDGSITGLQA TNAETTRWMD
DNGTVIGTGL NLTNLAPGNY RLEISNTYGC NVTTDFDVPQ HEPDLITVSQ LNTQNPVCNL
NNGSVTGMIL AGGTPASYRW LNMNDMEVST VKDLTNAGDG IYRLYVKDIE QCEQLVATII
LKTPNLPRID ATYLSIIDDV CSMTSGAIAG LGVNGKEPLS YAWLTPDSTV ISTSLQAQSL
PGGYDYTLRV TDAYGCVVYS DPLPVNAVDI LLLAPTVKDV VIMKGMTADI KVTNLHQGSY
NLFRPGTEWS ETNTTGEFSV TDITGSTTFG INYQFGECVS PTTYFKVDII DAVKVYAPTA
FSPNGDGHND IFRPKGIGVA TYSLFTVMDR WGNSVYTAKD VSTGWDGTFR GKKVDAGAYV
WLLQGIDILG QPVQEKGAVL VVY