| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4462 |
|---|
| Symbol | |
|---|
| ID | 8360635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5553847 |
|---|
| End bp | 5554662 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644966617 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003124105 |
|---|
| Protein GI | 256423452 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.981211 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.164574 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCAT ATTGGACTTT ACCACAGGAG ATCATGCTAC CCTGTATCCA GGATAAATAC
TTCCAGCACG AAGTCATCTC CGGGGACCAT AGCTTCGGAC ATCTTATCTC CGGAGAAGTG
AAAGCAAACA TCGGCGACCA GACGCATATC TTAAAACCCG GCGATACCTG GTTTGTACCA
CGTAATCAGC TGGCTACCTT TTTTAAATCT TCCAAAGACG GTCAGCCTTA CAAATCAGTA
ACGATCTGTA TCCGGGTGGA GCGTCTGAAA GAATATTACA GCCGGCATGA GCCGGTGATA
GTGGCCGATC AGCATCATGG TATCCGGCAA TATGAGGCAC ACCCCTTGCT GGAAAGCTTT
TTCGGCTCCT TACTGCCTTA TTTCGACCTG GAAGAAGGCG TACCACCTGC AATCGTGTCT
GTCAAGATCG AAGAAGCCAT TACCGTACTC CGTACCCTCG ACAAAACCAT CGACCGCTGG
CTGGCTAATT TCTCCGAACC CGGTAAACTC GATCTGGCCG ATTTCATGGA GAAGAACTTT
ATGTTCAACA TGCCGCTGCA AAGATTCGCT TATTTCACCG GACGTAGCCT GACCACTTTT
AAGACCGATT TCAAAAAGGC ATTCCAGGTA AGTCCGCAGC GCTGGCTGAC ACAAAAGCGC
CTGGAACTGG CCCATTATCA CCTGAGTGAA AAGAAACGCA GACCCGCAGA TATTTACCTG
GAAGCCGGAT TTGAAAATCT CTCACACTTC TCTTTTGCCT TCAAAAAACA CTTCGGTTAC
TCACCTGTTG AGGCGACTAC CCGTAACGCC TTTTAG
|
|---|
| Protein sequence | MSSYWTLPQE IMLPCIQDKY FQHEVISGDH SFGHLISGEV KANIGDQTHI LKPGDTWFVP
RNQLATFFKS SKDGQPYKSV TICIRVERLK EYYSRHEPVI VADQHHGIRQ YEAHPLLESF
FGSLLPYFDL EEGVPPAIVS VKIEEAITVL RTLDKTIDRW LANFSEPGKL DLADFMEKNF
MFNMPLQRFA YFTGRSLTTF KTDFKKAFQV SPQRWLTQKR LELAHYHLSE KKRRPADIYL
EAGFENLSHF SFAFKKHFGY SPVEATTRNA F
|
|---|
| |