Gene Cpin_4446 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4446 
Symbol 
ID8360619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5539109 
End bp5540275 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content46% 
IMG OID644966603 
Productprotein of unknown function DUF323 
Protein accessionYP_003124091 
Protein GI256423438 
COG category[S] Function unknown 
COG ID[COG1262] Uncharacterized conserved protein 
TIGRFAM ID[TIGR03440] conserved hypothetical protein TIGR03440 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0334841 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.294946 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGATTT TAAACATGAA AGAACTGCTT ATTCAATACA ATGCTATAAG ACAACATACC 
GAAAATATAT GTATGCCCCT AGCAAGAGAA GATTATGTCG TACAACCGGT GATGGATGTT
AGTCCGCCGA AATGGCACCT CGGACACAGT ACCTGGTTCT TCGAAACTTT CGTACTAAAG
CCTCACTTTA CGGCCTACAC GGAGTTCGAT TCGCAGTATA ATTTTGTTTT TAATAGTTAT
TACGAAACCA TCGGAGCAAG GGTGATCAGA ACAGATCGGG GCAACCTGAG CCGACCGTCC
GTAGATGATA TTTATAGTTA TCGTCAGCAC GTAAATGATG CCATGCGAAC ATTGCTTGCC
GGACCATTGA CGAAAGAACT TACCGGGATC ATCACTTTAG GATTGCATCA TGAACAACAG
CACCAGGAAT TATTATATAC TGATATTAAA TACATCCTAG GGCATAATCC ATTATTCCCG
GCATACAGTA CTACATCTGT TTATCAAGAA CCGGTAGTAG TAAATACCCG TTTCCTGACT
ATTCCCGCAG GGATATATGA GATCGGTCAT CAGGGGAAGG ACTTCTGTTT TGACAATGAG
CAGGGCAGGC ACAAGGTATA TCTGGGTGAA TATAAGATAG CTGATCAGTT GGTAACCAAT
GGCGAATACC TGGCTTTTGT AAAGGCAGGG GCTTACCAGG ATTTCAGGTA TTGGCATGCG
GAAGGCTGGG ATTGGGTGAA AAAGAATGAT ATCTCTGGCC CTTTATACTG GCACCTGGTG
GGTGGCAGGC GAATGTGTTA CACCTATGCC GGTTTACAGG AATTGGACCT GTCTGCTCCG
GTATGTCATA TCAGTTATTA CGAAGCAGCC GCGTATGCTG CCTGGAAAGG ACTGCGTTTG
CCAACAGAAG CCGAATGGGA AATCGCGTCA CAACAATTTA AATGGGGTGC GAGATGGGAG
TGGACGAACA GCGCTTACCT GCCTTACCCG GGATTTACTA AAGCGCCGGG AGCCGTGGGA
GAGTATAATG GTAAGTTTAT GGTGAACCAG ATGGTATTAC GGGGTGCATC TGTGATGACG
CCGGAGGGAC ATAGTCGTCA TACATACCGG AATTTCTTTC ACCCGCAGCA TCAATGGCAA
TTTACAGGCA TCCGCCTGGC AGAATAG
 
Protein sequence
MLILNMKELL IQYNAIRQHT ENICMPLARE DYVVQPVMDV SPPKWHLGHS TWFFETFVLK 
PHFTAYTEFD SQYNFVFNSY YETIGARVIR TDRGNLSRPS VDDIYSYRQH VNDAMRTLLA
GPLTKELTGI ITLGLHHEQQ HQELLYTDIK YILGHNPLFP AYSTTSVYQE PVVVNTRFLT
IPAGIYEIGH QGKDFCFDNE QGRHKVYLGE YKIADQLVTN GEYLAFVKAG AYQDFRYWHA
EGWDWVKKND ISGPLYWHLV GGRRMCYTYA GLQELDLSAP VCHISYYEAA AYAAWKGLRL
PTEAEWEIAS QQFKWGARWE WTNSAYLPYP GFTKAPGAVG EYNGKFMVNQ MVLRGASVMT
PEGHSRHTYR NFFHPQHQWQ FTGIRLAE