| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4420 |
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| Symbol | |
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| ID | 8360593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5513414 |
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| End bp | 5516182 |
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| Gene Length | 2769 bp |
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| Protein Length | 922 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966578 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003124066 |
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| Protein GI | 256423413 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0348998 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.536892 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAATA CACAACCATT CACCGCTAAT TTTATAAGCA ACGGCAGTGA AGTGGGGAAA
TTAATCCACG CCTATGATTG GTCTTCCACA CCGCTCGGAA CAATGGCCTC CTGGCCTAAA
ACTTTACAGT TTTCTCTGAA TATGCTCCTG CATACCAATC TGCCCATGAT GCTTTTCTGG
GGTGATCGTT CACTTTGCTT TTATAATGAT GCTTTTCTTC CTTTGCTGCC AGCAGGGAAA
CAAACACTTG TTCCCGGTAA AGCTGCCGCC GAATTGTGGC CGGACACCTG GCCGGCAATA
CAGCCAGCAG TGAATCAGGT ACGCAGCAAT GGAGATCCGG TTTCTCACGA TAACGATATA
TTCGCCCGTT ATAGTCATAA TGGTCATTCC TGTCATCATC ATCATCATTA CAGCCCCATA
CAGGATGAAA CCGGTCTAAG GGTAGCTGTA CTGCTGATTT GCACACAGAC AGCCCAAAAC
AAGCACGAAA AGTCCGCCGT AAGTGCGCAG CACTTCAAGG GTATCGTCGA ACAGGCGCCT
AACCCGATAT TCATCTTCAA AGGTGAGGAT ATGGTCCTGG CAATGGCCAA TGAACCGCTA
CTCAGGATCT GGGGCGTCAA TAGCGACGCT ATCGGCAAAC CCATGCTGGA CACCCTGCCC
GAATTGAAAG GACAGGGCTT CATGGAAATG CTGCTCGACG TATATCACAA TAAGCATATC
GTTACCGGCA AGGAAAAACC GGCTGTCTTC CATCGGCCGG ATGGCAGGAA AGAAACCATG
TATTTCAACT TCGTATATCA GCCCTATAAA GAGGCCGACG GCACGGTAAG TGGCGTATTG
GTGATTGCAA ATGACGTCAC AGAACAAGTA GTAGCCAGGA AAAGACTCGA AGAAAGTGAA
CTCCGCTTCA GAGCCTTGGT CATGGCTACT TCAGATGTAG TGTATCGCAT GAATCCTGAC
TGGTCAGAAA TGCAAAACCT GGTAGGAAGA GGCTTTCTGA CGGATACAGA AGTGCCTACT
CCGGACTGGC TGAAAAAATA CATCCATCCG GACGACCAGC CACACGTCCA GGCTCTGATT
AAAAAATCAG TACAAACACA TAGTGTATTC GAACTGGAAC ACCAGGTATT CAGACAGGAT
GGGGCTATCG GCTGGACCTT TTCCCGCGCG ATACCGATCC ATGATGAAGC AGGCAATATT
ATAGAATGGT TCGGCGCTGC CAGTGACATC ACACAGCGTA AAAGATTCGA ACAGGAATTA
GAATCTACCC GCGATGAATT GCGCGTCAGC AAAAGGTTAT ATGAAGCTGT TACAGCCAGT
ACCCCCGATC TGATCTATAT CTTTGATCGT AACTATAAAT TTATATACGC TAACCAGGCA
CTATTGACCA TGTGGGGGCG CACTTGGGAA GAATCTGTCG GTCAGGGACT GCTCGCCCTG
GGATATGAAC CATGGCATGC AGAAATGCAC GAAAGGGAAA TCGACCAGGT AATTGCTACC
AAAAAGCCGA TCAGAGGAGA AGTGGCATTC CCACACTCAG TTATGGGCTA CCGGATGTAT
GATTACATTT TCGCCCCCGT ACTGAATGAA GCCGGTGAGG TAGAGGTAGT CGCAGGTACC
ACCCGCGATA TCTCCGATCT TAAAGTCGCA GAACTGGCCC TGAAACATAG TGAAGAGCAA
TTCCGCACCT TAACGCAATC CTTGCCCCAG CTGATCTGCA CTGCAGACAT ACATGGCTAC
TGTGATTTTT TTAACCAGCA ATGGTACGAC TACACAGGCA GTCACGCAGA AGATGCCGAG
GGCAAAGGCT GGATGATGTA TGTACACCCT AATCAGCGGG AACTGCTATA CGATAAATGG
GAAAGAAGCC TCAAAAGTGG TGAATCACTC GCTTTCGAAT TCCAGCTGAA AGCAAGAGAC
GGACATTATC AGTGGTTTTA TATCGTAGGC AATCCTATCA AGGATGAAGA TGGCGAAATC
CTGAAATGGG TATCCGCACT GACCAATATC GAAGAACAGA AAGCTGTGGA AGAGAAGCTG
GAACAGCTGG TAAACGAACG TACAGGGGCA TTACAGCGCT CTAATGACGA TCTGGAACAG
TTTGCACACG TCGCCTCACA TGACCTGAAA GAGCCGGTCC GCAAGATCAA AACATTTGTC
GACCGCCTGG AACATGACGG TGAAACAAAA CTATCTGAAA AAGGAAGCAG CTATCTCAAT
AAGATCAATA CCGCGGCCAA CCGCATGTAT GACATGATTG AAGGGGTGCT AAACTATTCC
TCCATAGACA ATGCCGAACA GCCATTATCC AGCATCAATC TCAACGAGAC TTTAAATAGC
ATAGAACTGG ACCTGGAAAT CCTGATGAAC CAGAAAAAAG CGCATATTGT ATATGAAGGC
TTACCAACGG TAAAAGGCGC TCCGCTACTG ATTTATCAGT TATTCTATAA CCTCATTAAC
AATTCATTGA AATTTACCCG TTTGGATACC CCACCGCTCA TTACCGTGAC GGCAAAAAAG
GCTGCCAAAA TGGGCATCCC ATATCTCCAG ATCGATGTAA AAGACAATGG GATCGGTTTC
GAACAAACAC AGGCGCAAAA GATATTTAAC AGCTTTATCC GCCTGAACTC AAAAGATAAA
TTTGAAGGAA CCGGCCTTGG CCTGGCACTT TGTAAGAAGA TCGTAGAACG GCATCAGGGA
TATATTACCG CCAGTGGTGC AGAGAATGAA GGGGCGGTGT TTAGTATATT CTTACCGGAT
ATAAATTAG
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| Protein sequence | MENTQPFTAN FISNGSEVGK LIHAYDWSST PLGTMASWPK TLQFSLNMLL HTNLPMMLFW
GDRSLCFYND AFLPLLPAGK QTLVPGKAAA ELWPDTWPAI QPAVNQVRSN GDPVSHDNDI
FARYSHNGHS CHHHHHYSPI QDETGLRVAV LLICTQTAQN KHEKSAVSAQ HFKGIVEQAP
NPIFIFKGED MVLAMANEPL LRIWGVNSDA IGKPMLDTLP ELKGQGFMEM LLDVYHNKHI
VTGKEKPAVF HRPDGRKETM YFNFVYQPYK EADGTVSGVL VIANDVTEQV VARKRLEESE
LRFRALVMAT SDVVYRMNPD WSEMQNLVGR GFLTDTEVPT PDWLKKYIHP DDQPHVQALI
KKSVQTHSVF ELEHQVFRQD GAIGWTFSRA IPIHDEAGNI IEWFGAASDI TQRKRFEQEL
ESTRDELRVS KRLYEAVTAS TPDLIYIFDR NYKFIYANQA LLTMWGRTWE ESVGQGLLAL
GYEPWHAEMH EREIDQVIAT KKPIRGEVAF PHSVMGYRMY DYIFAPVLNE AGEVEVVAGT
TRDISDLKVA ELALKHSEEQ FRTLTQSLPQ LICTADIHGY CDFFNQQWYD YTGSHAEDAE
GKGWMMYVHP NQRELLYDKW ERSLKSGESL AFEFQLKARD GHYQWFYIVG NPIKDEDGEI
LKWVSALTNI EEQKAVEEKL EQLVNERTGA LQRSNDDLEQ FAHVASHDLK EPVRKIKTFV
DRLEHDGETK LSEKGSSYLN KINTAANRMY DMIEGVLNYS SIDNAEQPLS SINLNETLNS
IELDLEILMN QKKAHIVYEG LPTVKGAPLL IYQLFYNLIN NSLKFTRLDT PPLITVTAKK
AAKMGIPYLQ IDVKDNGIGF EQTQAQKIFN SFIRLNSKDK FEGTGLGLAL CKKIVERHQG
YITASGAENE GAVFSIFLPD IN
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