| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4412 |
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| Symbol | |
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| ID | 8360585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5494338 |
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| End bp | 5499146 |
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| Gene Length | 4809 bp |
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| Protein Length | 1602 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966571 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_003124059 |
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| Protein GI | 256423406 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0339694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTTGC TAAGCGTTCC TCTGTGCGCG CAAGTTAATG CGGATTTTAC TCCGAGTAAA
AGCAGTGATT GCGAAAGCCT CATTACAAAG TTCAATGATA ACTCCGGCGG TGATCCTGTT
TCCTGGCAAT GGAACCTGGG GAATGGATTT ACCTCTTCGG AGCAGAGCCC CAGTGCGTCT
TATACAACGC CTGGCACCTA TCAGGTGACA CTTACTGTAA AGAATGCAGC AGGCAATACC
AGCTCTGTTA CCAAGAGTGT CACCGTATGG GCTAAACCGC TACCTGATTT TACGGTTAGT
CCCGCGAAAG GTTGTATACC CCTCGACGTT ACTTTCACTG ATAAATCAAA TCCTGTCAGC
GGCACTATCA GTGCTTACAC CTGGGATTTC GGAGATGGCG CGACCGGCTC CGGTAGTCAT
CCTGTACACA CCTACAACAA TGTGCTATCG CCTACCGTTA CATTGACAAT AACCACCAGT
AACGGGTGTA CGGCATCAAA GCAGCTCAAC AATATTGTGA ATGTCTCTGA TGCGCTGACG
GCCAACTTCA ACGTATCCGA TAAATTTCTT TGTACTGCTC CCGGCGCATT AACAATTACC
AATAGTTCTA CCGGACCGGG TAATCTGAGT TACAAATGGG ACTTTGGTGA CGGCGGCACT
TCCGCCAGCG CAAATCCGGG TACGCATAAC TATACCACCA AGGGCGTTTA TAAAGTCAAA
CTGACTGTCA CCAGTGATAA AGGTTGTATC AGTACTAAAA CTTCCGATGA TATCAATGTC
GCCAACTTTA AAACTGATTT CACCTTGCCT GCGAGTATCT GTGATAACAA TACCGCGACT
TTCACAGCCA ACACGACGCC TCAGACAAAC AGCATCACCT GGAGTGTTGA TAAGGGATAC
ATCTATGATT ATGATGCTAC GGCGGCTTAT TATCCTGCGG GTGCCGGTAC GGTAAAGGTG
TCGATGACGG CGGACTACGA CAAATGTCAT CAGACCATTA CCAAGGATTA CGTCGTAAAA
GCATCGCCCA AGGCGGAATT TGTTACCAGT CAGGCGGCGA TCTGTGATGT ACCTGCTACC
ATAAAACTGA CGAACCAGTC AACGGATGCA AGTATCTGGG CCTGGGATTT TGGCGACGGA
CAAATATCTA CGTTGCAAAA TCCTACTGTC GTTTATAACA CCCTTGGATA TTTTAATATA
AAACTAACTG CTTCCAACGC CAACGGTTGT GCCAGTTATG TCGCGCATCA GGTGAATGTG
GTTAAGCCAG AGGTCAGGGT ATATACGAGT GTGCCGAATG GTTGTGTAGG ATTAACGCCT
TCCTTCAGTA GTTCAATCAG TACAGGCGAC GCCATTGTCA GTTATGAATG GGACTTTGGA
GATGGTACGC CGAAATCGAC GGATCCGACA CCTTCACATA CCTACACCAG GGAAGGAACT
TTTCCGGTCA ACCTGACCTA TGTCACCAGC AATGGCTGTA AAGGAACAGT GCCCCTGACC
TCCTATCTGG TTATCGAGAT CTATAAAAAG CCGGTACCTG ACTTTTCCTC TCCGGAAGCG
CCACAGATCT GTGGTAATAA CTGGGTGCAT TTTAATGGCA CAAGTGATGT AGCCAGCACC
TGGACCTGGA ATTTCGGGGA TGGTACCATC GCCGAGCATA GTGTTCAGAA CGTGACGCAT
AGCTACAGGG AGCCTGGTAC TTATACTGTA AAGCTAACTG TATCTAATAA CGGTTGTTAT
GAAACAGTCA CTAAAACAGC CTATATCACC GCCGTCAATC CTTTTCCCCG TTTCAGCAGA
CAAAACATCG ATTGTGAGAA CCGTACAACG GCCAGCTTTG ATGAACATTC ACTGGGTACG
ATCAACAGCT GGAAATGGAG CTGGGGAGAT GGGAAAGAGA ATACCTATAC AACAAAGACA
AGTCCGGTTA AACATAAATA CGATAAAACA GGCGATTACC TGGTTAAACT GACCGTTACA
GACGGTACCT GTACCAGTAC TGACTCCATG ATCGCCAGTA TACTGGCGCC GACGCCGATC
ACGATTACAG CTGATAAATC AACGTTGTGT ACGAATGAAT CACTGATGGC AAATGTCACT
TCCATTGACA CCAAATTATA TGAGTTAAAC TACACCTGGT CTTCTTCGGA TGGTAAATCG
TATTACGGTA CTTTTAATAC AATTTTTCAA AACCTCGCCC CCGGAAAGGA CACCATTCGT
TTTATCGCCT ATAACCGGCA ATACTGTATA GACACCAGTA ACAGCGTGGT CGTAAACGTA
CATGGACCGA TGGCAAAATT CCGTTCTCCC ACGACACCGG AATGTCGTGG TACGGAGCTG
ACGTTTACAG ACCAGACGGA TGTTTCCAAG GGAAAGGCGA TCAAAACATG GAGCTGGGAT
TTCGGAGGTG ATAATGCTAC GAAGGTATTC TCAGCTCCAC CCTTTAAATA CACTTACAAC
AGGTCCGGTT ATTACTTCCC CCGACTGACC GTGACCGACC TGGATGGCTG TACCAGTACC
TTCACCGGCG ATTATTTACA GGTGAACGGA CCAAACGCTG ACTTTGTGCC CAGCGCTAGT
CTGATTCCTC CGGGAGGTGA TGTGTACTTT TATAACTATA CGACTGAGAC GGGCGGTAAT
GCCAGTTATC AGTGGGATTT CGGCGATAAC ACCACTTCCA CAGATGTCAA TCCTTACAAG
AACTATCCCA ACAAAGGACT ATATACTGTC AATCTGCTGG TAAAAGACAA CAATGGTTGT
AGTGACAGTG CGCAAAAGCA GATCAAGGTA TCGAGTGTGA GCGCTGGCTT TACGGCGACG
ACGACCTTTG TAAATAATAG TGGTTGTCCG CCGGTGATTG CCAGTTTCAC AAATACCTCT
GTGAACTATA TCAGTTCTTA CTGGGATTTT GGTGATGGCA GCTTTTCCAC GATTCCAAAT
CCCTCCCATA CTTATACCTA CGCAGGAAAA TATAAGGTGA CGCTGAAAGT GATGGGAGAT
GCGGGGACAG AAGATCAGTA TGAACAGGAG TTAGAGGTCA AGGGGCCTTA TGCGACGATT
GCCACGTCAT CCAATGGTGG TTGTCTTACG AAAGAGATCG AGTTCCGGGT ATCAGCAACA
GCAGCGGTGA ATTTCGCTTG GGACTTCACC GATGGTTTTG TAATGGAAAC AACGGATTCT
ATCATCAAAC ATACTTTTAA AGAACCGGGT ATTTATAAAC CACGACTGAT CCTTTCAGAC
CAGTCAGGTT GTAAGGGTAC TGCTTTCCTC GATGAACCTA TTGTAATAGA TAATCTGAAA
ATAGAACTGG CGTCAACACC GGCATACGTA TGTGATGAAG GATGGGTGGC CTTTACGCCT
AAGTTCAACA GTTACTCTAT TGACACCTTG AAAACAACAG CGAAATACAA ATGGACATAT
GACGGCACTA TGCGCTCAGA AAAAGACACC ACTGCTGCGC CACGTTTTTA CCTTGATAAA
ATACAGGCGT ATAATTTCAC GCTGACGACC ACTACTGCTT ATGGATGTGT ACAAACAGTC
AGCAAAACGG TACATGCCTA CCCTAAACCT GTCGTAAGCA TCAGCGGACC CTTACAGGGG
TGCCAGGATG CACCGGTGAC ATTCAACGGG ACTGTTACAA AGGTGAGTGA TGTGAGCTGG
AGGTGGGCGT TTGGCAACGG CAATAGCAGT GAAGTACAAC AAGCGGCCGA TCAGACTTAT
ACGAAGACCG GCCCCACCGA AGTCGTACTC ACGGTGATCA GTCAGGATGG CTGTAGTGAT
ACTGCCCGCC ACAATATCAA TATATTGCCT AAACCAGCCG TCACTACGAC GGCTACATCA
ACAGTGGTAT GCCTGGGTAA TACAAGCACT TTAACAGCTA CAGGTGGCGT TACTTATCAG
TGGTCCCCAG CAGGAGAACT GAGCAATCCG CAGGCAGCAT CTCCTGTTGC GATGCCGACA
CAAAGTACGG ACTACCAGGT AACAGTGACA GATGCGAATA ATTGCAGCAA TACAGGTGAT
ATCAGTATCC GCGTAGCATT GCCTTTTACC ATACAGGCAA CACCCGATAC AGCGATCTGT
CTGGGTCATG TACTGCCTTT ATGGGTAGGC GGCGCTGATC ATTATGTATG GCAGGGAGAA
GGGCTGGATA ATGTCAATAC CGCTGCGCCA CGTGCTACCT TAACAGCATT GGGCGACTAT
ACTTACCAGG TAACCGGTTA TGATGCGGAT GGTTGCTTTA CACATGATAC TTCGCTGGTG
GTAAGCGTAC ACCCTACCCC AACGATTAAT GCCGGCGCAG ACCGCGTCGT AATGGCCGGC
ACGCCTGTAA GGCTGAGCGG CGAGGGAAGC GCGGATATTG TACAATGGAA CTGGTCGCCA
CCGGAGTATC TGAACTGTAC TACCTGTGCG ACACCGGAAG CCTTGCCGAA CTTATCTACC
AATTATATGG TAGAGGTAGA AAACAGTTTT GGTTGTAAGG CAACAGATGA TGTATTTGTG
AAGGTCACCT GTGACCAGGG GGCTATATTC CTTCCGAATG CCTTTACACC CAACAGGGAT
GGAAAAAATG AGTGGTTCTA TCCGAAAGGA CGCGGTGTAA AAGAGGTGAA ATGGATGCGT
ATCTATGACA GATGGGGAAG CCTGGTGTTT GAACGAAATC ATTTTCCGAT CAATAGCAGC
ACTGCTGGCT GGGATGGTAC ATGGAAAAAT CAGATAGCGC CGATAGGCAC TTATGTATAT
GCATTGGAAA CGATGTGTGA AGATGGTACT ACATTCCTGT TCAGGGGTGT AGTGACAGTG
GTCAGGTAA
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| Protein sequence | MLLLSVPLCA QVNADFTPSK SSDCESLITK FNDNSGGDPV SWQWNLGNGF TSSEQSPSAS
YTTPGTYQVT LTVKNAAGNT SSVTKSVTVW AKPLPDFTVS PAKGCIPLDV TFTDKSNPVS
GTISAYTWDF GDGATGSGSH PVHTYNNVLS PTVTLTITTS NGCTASKQLN NIVNVSDALT
ANFNVSDKFL CTAPGALTIT NSSTGPGNLS YKWDFGDGGT SASANPGTHN YTTKGVYKVK
LTVTSDKGCI STKTSDDINV ANFKTDFTLP ASICDNNTAT FTANTTPQTN SITWSVDKGY
IYDYDATAAY YPAGAGTVKV SMTADYDKCH QTITKDYVVK ASPKAEFVTS QAAICDVPAT
IKLTNQSTDA SIWAWDFGDG QISTLQNPTV VYNTLGYFNI KLTASNANGC ASYVAHQVNV
VKPEVRVYTS VPNGCVGLTP SFSSSISTGD AIVSYEWDFG DGTPKSTDPT PSHTYTREGT
FPVNLTYVTS NGCKGTVPLT SYLVIEIYKK PVPDFSSPEA PQICGNNWVH FNGTSDVAST
WTWNFGDGTI AEHSVQNVTH SYREPGTYTV KLTVSNNGCY ETVTKTAYIT AVNPFPRFSR
QNIDCENRTT ASFDEHSLGT INSWKWSWGD GKENTYTTKT SPVKHKYDKT GDYLVKLTVT
DGTCTSTDSM IASILAPTPI TITADKSTLC TNESLMANVT SIDTKLYELN YTWSSSDGKS
YYGTFNTIFQ NLAPGKDTIR FIAYNRQYCI DTSNSVVVNV HGPMAKFRSP TTPECRGTEL
TFTDQTDVSK GKAIKTWSWD FGGDNATKVF SAPPFKYTYN RSGYYFPRLT VTDLDGCTST
FTGDYLQVNG PNADFVPSAS LIPPGGDVYF YNYTTETGGN ASYQWDFGDN TTSTDVNPYK
NYPNKGLYTV NLLVKDNNGC SDSAQKQIKV SSVSAGFTAT TTFVNNSGCP PVIASFTNTS
VNYISSYWDF GDGSFSTIPN PSHTYTYAGK YKVTLKVMGD AGTEDQYEQE LEVKGPYATI
ATSSNGGCLT KEIEFRVSAT AAVNFAWDFT DGFVMETTDS IIKHTFKEPG IYKPRLILSD
QSGCKGTAFL DEPIVIDNLK IELASTPAYV CDEGWVAFTP KFNSYSIDTL KTTAKYKWTY
DGTMRSEKDT TAAPRFYLDK IQAYNFTLTT TTAYGCVQTV SKTVHAYPKP VVSISGPLQG
CQDAPVTFNG TVTKVSDVSW RWAFGNGNSS EVQQAADQTY TKTGPTEVVL TVISQDGCSD
TARHNINILP KPAVTTTATS TVVCLGNTST LTATGGVTYQ WSPAGELSNP QAASPVAMPT
QSTDYQVTVT DANNCSNTGD ISIRVALPFT IQATPDTAIC LGHVLPLWVG GADHYVWQGE
GLDNVNTAAP RATLTALGDY TYQVTGYDAD GCFTHDTSLV VSVHPTPTIN AGADRVVMAG
TPVRLSGEGS ADIVQWNWSP PEYLNCTTCA TPEALPNLST NYMVEVENSF GCKATDDVFV
KVTCDQGAIF LPNAFTPNRD GKNEWFYPKG RGVKEVKWMR IYDRWGSLVF ERNHFPINSS
TAGWDGTWKN QIAPIGTYVY ALETMCEDGT TFLFRGVVTV VR
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