| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4406 |
|---|
| Symbol | |
|---|
| ID | 8360579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5489555 |
|---|
| End bp | 5490064 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644966565 |
|---|
| Product | Cupin 2 conserved barrel domain protein |
|---|
| Protein accession | YP_003124053 |
|---|
| Protein GI | 256423400 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0662] Mannose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0295153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCCTG ATAAGCAATC CGTTCAGGTC ATCGTACCAG ATGCCGGCAA AGCAGTTTCA
ATGATGGGTG ATTCCTATCG TATCGTGATT TCAGGCGCAG CCACACAAAA TGAATTCGCG
GTGATAGACA TGCTGGTCCC GCCAGGTGGT GGTCCTAATC CACATGCACA CAAAGACATC
CATGAATCCT TTTATGTGAT GGAAGGCGAA GTGGAGTTCA TGACAGAAAA CGGTCCTGTA
CTCGCAGGCG CCGGTACTAC CGTACTCATT CCGAAAGGCG GAGCAGTCCA CAATTTCAAA
AACAAATCTG ATAAATTAGC CCGCCTCTGG TGTACAGTTG TGCCGGCTGG TCTTGATCAG
TTTTTTGAAG AAGTGGGCAC ACCCGGCACC TTCGGAACCT TCTTGCCGCC TGCACCGCTG
ACCGGAGAAG ACATCTCCCG ATTGGAACAC ATTGCAGCAA AATATGGCCA GGAGATCTAT
CCGCCGGATT ACTGGGAAAA AAAGAAATAG
|
|---|
| Protein sequence | MSPDKQSVQV IVPDAGKAVS MMGDSYRIVI SGAATQNEFA VIDMLVPPGG GPNPHAHKDI
HESFYVMEGE VEFMTENGPV LAGAGTTVLI PKGGAVHNFK NKSDKLARLW CTVVPAGLDQ
FFEEVGTPGT FGTFLPPAPL TGEDISRLEH IAAKYGQEIY PPDYWEKKK
|
|---|
| |