| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4402 |
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| Symbol | |
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| ID | 8360575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5483579 |
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| End bp | 5485291 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644966561 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003124049 |
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| Protein GI | 256423396 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGGCTA ATAAAGCAAA ACACCCGGTG GACAATAATC AAAGCAGGCT TTCATATTTT
CTTGACACAT CAATAGACCA GATCGCGCTA CCGGAACGCT TTACTTTTCC TTTCTACTAC
GAACCACATC CCTTAACACG CATAGCAGCC GCCGAACTAC AGCATTACCT GGAAACACAG
ACGGATCTCG ATCACAACTT CGGATTAAGT CCGGACAAGG AAGGGAATAT CATCGGGAAG
ATGTTTGGCG TACTGGTCGT AAAGGATACT GAAGGAAAGC TCGGTTATTT ATCCGCTTTC
TCCGGTAAAC TCGCAGGTAC CAATGATTAC CAGAAATTTG TGCCGCCCGT CTTTGACATG
CTGGTTGAAA ACAGCTTTTT CCTCAAAGAA CAGGAAGTGA TCAACAATAT CAACAACCGT
ATCACAGCAA TCAGCACAGA CGAAAATTAC GAAGGACTAA AGCAAAAAAT CGAACAACTC
TCCATCCGGT CTTCCACTGA AATATCCGCT TTCAAAAAGC AGTTAAAAGA TAACAAAGAA
GACCGGAGGA AACTGCGTGA AGAATGGATG AACACCCTGA ATCAGCAGGA TTATGCCCTT
GCTGAGGCAG ACCTGGTGAA ACAGAGCTTA CGCGACAAAC ACGAGCTAAA AGAGCTTACA
AACAGGTGGG AACAGCAACT AGGAGAGATG CGTACCCGCT TAGCACAATT TGATGCCGAT
ATGGAGGCAT TAAAGAACGA ACGCAGGGAA AGATCCGCCA CCTTACAGCA ACAGCTTTTC
CAACAATACG TATTCCTGAA CCAGGCTGGC AAAAGTAAAA GTCTGCAGGA AATCTTCAGT
GCCACCCCTT TCGGCAAACC ACCTTCCGCA GCAGGTGAAT GTGCCATGCC CAAACTATTA
CAATACGCCT TTACAAACCG GTACACACCC ATTGCAATGG CAGAGTTCTG GTGGGGAGCC
GCACCAAAAT CCGAGATCAG GAAACACAAG CATTTCTATC CTGCCTGTAC GGGTAAGTGT
AAGCCTATCC TCGCACACAT GCTGGAAGGG ATGCCGGTAG ACGAAGACCC CTTACTACGG
ACCCCGGAGA CGGTCGGCGA ATTGGATATC ATCTACCAGG ACGAAAGTGT TGTGGTAGTC
AACAAACCCT CCGGCCTGCG TTCCGTTCCC GGTGTCACCA TCCAGGACTC CGTCTACACC
CGTCTAAAAC ACGCATTAGG AGACATAGAA CCGCTGATCG TTCATCGTCT GGACATGGAC
ACCTCCGGAC TGCTGGTAGT CGCTAAAACG CAGGCCGCCC ACAAACACAT CCAACGTCAA
TTTCTGCAAC GCACCGTCAG CAAACGTTAC ACCGCCCTGC TCTCCAAAGT AATAGATACT
TCAGAAGGAG AAATCGACCT CCCGCTAACC GCCGATCTCT TCAACCGTCC ACGACAAATA
GTCTGTTTTA CCACCGGTAA AAAGAGCGTC ACCCGCTGGA AAGTAGTAAC ACGATATCAG
GCAATGACTA AGATCGACTT CTGGCCACTC ACCGGAAGAA CCCATCAGTT AAGGATGCAT
TCCGCCCACC CACTCGGATT GAATGCTCCC ATCGTCGGCG ACGATCTCTA TGGAACAGCC
GCCGAAAGGA TGTACCTCCA CGCCGCCCAC ATTGAATTCA CTCACCCCCT CAGCCGACAA
AGAATCAGCT TTGACGCCCC CGTCACTTTC TAA
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| Protein sequence | MQANKAKHPV DNNQSRLSYF LDTSIDQIAL PERFTFPFYY EPHPLTRIAA AELQHYLETQ
TDLDHNFGLS PDKEGNIIGK MFGVLVVKDT EGKLGYLSAF SGKLAGTNDY QKFVPPVFDM
LVENSFFLKE QEVINNINNR ITAISTDENY EGLKQKIEQL SIRSSTEISA FKKQLKDNKE
DRRKLREEWM NTLNQQDYAL AEADLVKQSL RDKHELKELT NRWEQQLGEM RTRLAQFDAD
MEALKNERRE RSATLQQQLF QQYVFLNQAG KSKSLQEIFS ATPFGKPPSA AGECAMPKLL
QYAFTNRYTP IAMAEFWWGA APKSEIRKHK HFYPACTGKC KPILAHMLEG MPVDEDPLLR
TPETVGELDI IYQDESVVVV NKPSGLRSVP GVTIQDSVYT RLKHALGDIE PLIVHRLDMD
TSGLLVVAKT QAAHKHIQRQ FLQRTVSKRY TALLSKVIDT SEGEIDLPLT ADLFNRPRQI
VCFTTGKKSV TRWKVVTRYQ AMTKIDFWPL TGRTHQLRMH SAHPLGLNAP IVGDDLYGTA
AERMYLHAAH IEFTHPLSRQ RISFDAPVTF
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