| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4396 |
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| Symbol | |
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| ID | 8360569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5470762 |
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| End bp | 5475315 |
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| Gene Length | 4554 bp |
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| Protein Length | 1517 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644966555 |
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| Product | peptidase C19 ubiquitin carboxyl-terminal hydrolase 2 |
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| Protein accession | YP_003124043 |
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| Protein GI | 256423390 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG5077] Ubiquitin carboxyl-terminal hydrolase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.20461 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTCG AACATAGTAG CGAAAAGACT ATCCATAACC AGGACCGTGC TGTGGCGCAT
CAATCGAATA ATTCGGCCAT TTCCAGACCG GCAGTACCTG CTATTCAAAA AATGTCGGAA
GATAAATCAG AGGAAGAAGC AGGTATGGAA GAATTGGCAG AGGATGCCGC CATTCCTGCT
AAATTCTCCT TGTCTGCAGA TAATAGCAAT GATATTCCTG GACTTCCCAA CATACAGCCA
TTCCAACTCA GGTCAGGCAG CACCGCAATG GCTGCCGGCC CGGTCGTTCA GCTGAAAAAA
CTACTGATTA CAGCACCCGG CAGAGGGAGG AAAAACGATG TTGTGATAGC AATGGAGCAT
GATGACTTGA TAAACGCTAT CCAGCCGCCC AGAGTGAGGC GTACCGCTAA TGGGATGACC
ATTAGTATCG GAGGGAAGCC CCCTAAATAT GTTCCGATCG ATAATGTGAT TGCTGCAGTG
CAAAAAGCGA TTAGGGCCAT GGACGTAGAT GGGAAGGTGG CCAATGAACT CAAAATGCTG
CTGGAGGTAC TTACCGACCA AAAGAATACC AAACCCAAGA CACGAAGCAA TAAGCGCAAA
CGGGAAGCAT CACCTGTAAG GGACGTAAAA CGACCAAAGA AAGATGATAA GGGAATGAGG
GATCTTGAGG AGAAAAAAGT ATATGAGGCG CTGGAGAAAG AGAAGAAAGA TGAAGTGCAG
GTCGGAGACT TTACTACTGT TGAGCAGGAA GTAAAACCTA TCGGTTCGGA TGAAGCACTG
AAATTTGTTG CCTGGAACCT GAACCATTTT GGGGAGGGCA AAAATCTGAC CGAGAAAGAA
ATAACAGCGA AGATAAGGGA ATTCTCACCC AACGGCGGCG TAAGGGACAT GAAACAATAT
GACAAGTATG AGCGTACCCC CGAGATGATC GACGGATTTC TGAATGTACT GGCTAAGTAT
GCAGGTGCAC TGCCGCTTTT TACAAATACG ACGGAGGTCA GTCTCCTGAT GGATGCTGTC
AGTAACCTGA AGTATATATT GGAAAGAGTC AGCAAAAAGA ATAAGTACTA TGGCGTAAAA
TATACCATCA TCGAGGAAAT TGCCGGTTCC CTGAAAAAAC ATTACATACT GGCGCATTCC
CGGCGTTTAT TAAAACAGCA CCCCTCCCTC ATTATGGGCT TCAACGAAGT AGGTGAAGGA
GTAGATACAA TGAAGCAGAA ACTGGAAGAC AAGACAAAAG AAAAACCTAA AGGCAGTGGC
ATTCAGGTAG AAAGAGGGCC ACGCCTGCAG TCTATTTCGA TAAGTGTACC ACTTATTATA
GATGCAGTTA ATGTACATAA CAGATTCGCG GAGAAGAAAA ATTGGATACC TAACTACCTG
GTGGAGAAAA AGGAACGATA TAGCACATCT GATCGTTGGG ATCACTTTGA GGCATATGAA
CGACTGGGTG AAAAGACCGA CTACCTGCGC AATGGACAGA TAGAGTATTA TCCTGTCGCT
TTTAATAGCG GCGTATTTGA ATATAAAGGC GCCATGATAG TCAGTGGAAC TGAAGTTATT
CCGGTGGCGG ACGCGGAGAA CATAGTATGG ACTAAAAATC CCGGGCTGGT TAAATATCAC
AAGTTCAGAC CTATTGTCGT ACACAGATTC GCATTAAAAA AAGAAAAAAA AGAGGAAGAA
GGTACTGATA TTACCATGGG CATGTCGGAA GGCGATAATG CGCCCGCTGA GAAGGAAGTA
TGGTTTGGCA TGGTCCATAC AAGTCCGCAT GGCGACGAAT TTGACAGAAG AGAAATCTAT
GTGAATCAAC TGAGCGAATC CATACCGGCA CTGAGAGACG AGGCGGCTGG CAAAAATGCG
CAATTGGTCA TTGGTGGTGA TTATTACATC GCAGAGGAAG CATTGATCAC AAGTCCTCCT
AAATTACAAT ATGAAGATAA TAACTATGTA GATGATACCG GGTTCAAGAT GGATAGCTCG
GAGGTCTCCC GCCGGGGCTT GAAAGCGGGC AAGTATGTGG GGAAGTCTGG CCGGGTTAAA
ACAGTTAAAG AGACCAACAT GGAATTGGAG GGAGAGACAG AGGCAAAGAC AGAGATGCCA
ATTGGCGCAG TAACGGCTGT AGATACTGAG ATGCAACCTG AGATTGAAAC AGGGGCAAAG
ACAGTTACGG AAATTGGCCC GGTAACTAAT AAAAAACCGG AGATAGAGCT GGATGTAGAG
ACGGATGCAA AGGAAGGCAA GAAGAAAGAG GAAGAAGAAA ATCCTTATGT GCAGGGGAAA
ATGAACGAAA TCAGGAACAT GGTACACCCC TTAACAGATG ACCCATATAA TTTTAAGGAT
ACCTTAAGCA AGGAAAAGAT GAAGGATGTG CGCTCCCTGA CTGGTACGAA TGAAAATAGC
CTGGGGTTGC AAAGCGCAGA TTACTTCATC ATCGATCAGG CCACATCCCA AACGTATCAG
ACCGGGATCA TAGACCCCGT TACCGGTATA CCGCTTTATA TGGAAAGCGA TAACCGGGAA
ATGTCAGATG CCTGGTTCGC TTTTAGTGAT CACGTACCGG TGATGCTGGT CGTATCTCCG
AACGAAGATG ACAAATCCGT CAACAACGCA TTTGCGGGCA ATAGAGGATA TTTTGACAGC
GATCCTTCCA GCTTGAATCT CTTTGACCTG AGATACCTTC AGATATCCAA TGCAATGGCC
AGGATCCGGG AGGACGTGAG TTTATACCCT AAAGAGCATG TCGATTTCCT TGAAAAGCAC
TTTGCCCTGT TACAGGACAG ACGCAAATCA GGAATAATCG GAGATGATGC CCTGCTATTT
ATGAACAGGT TCATAATAGA TATAGATAGC GTAATGGCGG GTAAAAAAGA AAGGATGGAT
ATCTCCACGG AAATGTTTGA AGTGTATCAG GCAAGAGAAG CTTACATAAC GACAGTTCTT
TACCAGATAT GGTCCGACAT GTATTCAATC AGGGACAATG ATGGGAATAA TGATGTGCTC
CTGATACATA TTGACGATGT ACGGATGATC CTCAAAGAGG AAAAAATAAA TGCACTCCAC
AATAGAGGCA AAGGTATGGG CAATCAGGCA TCAAAAGAAG CCAGACAGGT CCTTGAGAGA
TATGTACAAA CATCTTCTTT GGATGCACTA GACGAAACTT TCGAAGCACT GATTACCTAT
CCTCCGGTGA TGGATAATCT TGCACGTGAG AAAGCCCAGT ATAATCTGGT GATGGATGAT
TTTTCACATC GGAAAGCCGA AATAACAACA GCTTTGTTAC AGGGACTGAT GGAGCAGATC
GGGTTATATG TGAATGGAAT GATGGAGGAT GAGGCAACAG ATAAGGGAAA GAAACAGGTA
AACATCAGGA GCAACTTCAA TTTGTTCGCA GAACTTATAG GGAATGCCGG AACGACGCAT
AAGGTACGTA AAAAGCATGA CAAGAGCTTT TCTGGTGATA TCTATGGAGA AAACCTGCAG
GATACTACCC AGGAGCTTGC CCTCTTTGGC GGAATACCCA ACAGGGGAAA TGATTGTTTC
ATGAATTCAT TGTGTCAGCT GTTGACACTG CCCGCTTATC AGGAACTGGC CCTGGATTTC
GAAGTACGGG ACTTTATCAA TAAAATAGGT AAACCGGAGC CGATCAAAAG AATAGACGTC
TGGGAGTTAC GCCTGTATTT ATTTGCAGTG AACCGGATTA ATACGATGGG CGGACAAGAG
GACGCTACCG AGCTGCTTGG CAAGCTGATG GATGAAATTG AACCACTGTT GGTAAATGAT
AAGCAACAAT ACGACGATAC ATTTAAAATC CTGAGTAGCT ATAAACGCAC CATCACCGGA
TCAATGCCGG ATGTTACTAA TGCGCCTGTA GATCAAAGTA TTGTGCAATG GGTCAACAAT
GAAAAAACAA CGGACCAGGC GCCGGAAAAT ATACTGTACG TACCAATTGA TAGTGCAACA
GGTCTCGTGA ATTGGTTACA GTCTCCTAAA CGACAGTATT CATTCCTGCC CGGCTTAGAA
TGGGCTGCTA TGAACGATCA ATGGCATAGT GTAATAAAGA TGGAAGAAGA GGTCGTATTC
AAACGTTTAC CTGCCGTATT AACTATCGCA TTAAATCGTT TTGGGAATGA TCTGCAGAAA
ATCAACAAGA AATTCGAAAT GCCGGTTAAA TTCAGCCAGA TCTCCAATGA TGGTGGCATA
AGAATGGAGC ATTTCTACGA ACTGAATGGA TTTGTCTATC ATCAGGGTAC TACCCGCAGT
GAAGGCCATT ACTGGATGCA TAAAAAACAA GGCGACAACT GGATGAAAGC CGAAGATGCA
TATGTGGACC CTTCAAATAT GGAAGAATCT GACAATGAAA GAACGTTCTC CCATGACATT
GACAACGCAT ATATCTATAC CTATGTTCGT ACACATACAG CGCAGCCTCA GGACATGGGT
CCTGTTCCGT GGGATGGGAC TTATATGGAA CAGGAGAACG ATGGCAACGT AGAAACACCG
GTTACAGGAA GTAGTCCTAA TACGAATAAG CAGCCGGAAT ATTTCTTCCT GTAG
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| Protein sequence | MPLEHSSEKT IHNQDRAVAH QSNNSAISRP AVPAIQKMSE DKSEEEAGME ELAEDAAIPA
KFSLSADNSN DIPGLPNIQP FQLRSGSTAM AAGPVVQLKK LLITAPGRGR KNDVVIAMEH
DDLINAIQPP RVRRTANGMT ISIGGKPPKY VPIDNVIAAV QKAIRAMDVD GKVANELKML
LEVLTDQKNT KPKTRSNKRK REASPVRDVK RPKKDDKGMR DLEEKKVYEA LEKEKKDEVQ
VGDFTTVEQE VKPIGSDEAL KFVAWNLNHF GEGKNLTEKE ITAKIREFSP NGGVRDMKQY
DKYERTPEMI DGFLNVLAKY AGALPLFTNT TEVSLLMDAV SNLKYILERV SKKNKYYGVK
YTIIEEIAGS LKKHYILAHS RRLLKQHPSL IMGFNEVGEG VDTMKQKLED KTKEKPKGSG
IQVERGPRLQ SISISVPLII DAVNVHNRFA EKKNWIPNYL VEKKERYSTS DRWDHFEAYE
RLGEKTDYLR NGQIEYYPVA FNSGVFEYKG AMIVSGTEVI PVADAENIVW TKNPGLVKYH
KFRPIVVHRF ALKKEKKEEE GTDITMGMSE GDNAPAEKEV WFGMVHTSPH GDEFDRREIY
VNQLSESIPA LRDEAAGKNA QLVIGGDYYI AEEALITSPP KLQYEDNNYV DDTGFKMDSS
EVSRRGLKAG KYVGKSGRVK TVKETNMELE GETEAKTEMP IGAVTAVDTE MQPEIETGAK
TVTEIGPVTN KKPEIELDVE TDAKEGKKKE EEENPYVQGK MNEIRNMVHP LTDDPYNFKD
TLSKEKMKDV RSLTGTNENS LGLQSADYFI IDQATSQTYQ TGIIDPVTGI PLYMESDNRE
MSDAWFAFSD HVPVMLVVSP NEDDKSVNNA FAGNRGYFDS DPSSLNLFDL RYLQISNAMA
RIREDVSLYP KEHVDFLEKH FALLQDRRKS GIIGDDALLF MNRFIIDIDS VMAGKKERMD
ISTEMFEVYQ AREAYITTVL YQIWSDMYSI RDNDGNNDVL LIHIDDVRMI LKEEKINALH
NRGKGMGNQA SKEARQVLER YVQTSSLDAL DETFEALITY PPVMDNLARE KAQYNLVMDD
FSHRKAEITT ALLQGLMEQI GLYVNGMMED EATDKGKKQV NIRSNFNLFA ELIGNAGTTH
KVRKKHDKSF SGDIYGENLQ DTTQELALFG GIPNRGNDCF MNSLCQLLTL PAYQELALDF
EVRDFINKIG KPEPIKRIDV WELRLYLFAV NRINTMGGQE DATELLGKLM DEIEPLLVND
KQQYDDTFKI LSSYKRTITG SMPDVTNAPV DQSIVQWVNN EKTTDQAPEN ILYVPIDSAT
GLVNWLQSPK RQYSFLPGLE WAAMNDQWHS VIKMEEEVVF KRLPAVLTIA LNRFGNDLQK
INKKFEMPVK FSQISNDGGI RMEHFYELNG FVYHQGTTRS EGHYWMHKKQ GDNWMKAEDA
YVDPSNMEES DNERTFSHDI DNAYIYTYVR THTAQPQDMG PVPWDGTYME QENDGNVETP
VTGSSPNTNK QPEYFFL
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