| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4394 |
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| Symbol | |
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| ID | 8360567 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5464860 |
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| End bp | 5469722 |
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| Gene Length | 4863 bp |
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| Protein Length | 1620 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966553 |
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| Product | PKD domain containing protein |
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| Protein accession | YP_003124041 |
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| Protein GI | 256423388 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3291] FOG: PKD repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.133188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.147462 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGGCA ATGCCCTCGC ATTTGCGCTG CTTTGGAGTG CCATGTCCTT AACCAATTCT
GTCCATGCTC AACTAAAGGC GGATTTCACT CCAGGCAAAA CAAGTGATTG CGAAAGCCTG
ATAACAACAT TTACTGATAA GTCCACTGGT AATCCCGTGT CCTGGCAATG GGATTTCGGT
AATGGATTTA CCTCCAATGA GCAACGTCCG AGCGCTGCCT ATACCTCTCC CGGTATTTAT
AAGATACTGC TTACGGTGAG AGACGCAGCA GGCAATTCCA GCAACATTAC AAAGACGGTG
ACCGTGTGGG AGAAGCCCAA ACCGGATTTT ACCGCGAGTC CGGCGACTGG CTGTATGCCG
CTGGAGGTAA AGTTTACAGA CAAATCTGAT CCTGTAAATG GCACGATGAC CACCTATACC
TGGGATTTCG GGGATGGCGC TATCGGTAAT GGCAGTAACC CTGTACATGT ATATAATAAT
GCCTTATCTC CTACTATCAC ATTGACCGTT ACCAATAGTA ATGGTTGTAC GGCTTCTAAA
AGGATCAGTA AGATTGTAGA TGTATCCGCG GCGTTAAAAG CGGACTTCAA AGTATCTGAT
AAATTCCTTT GTACGGCGCC TGGTGCACTA AGCATTGAGA ATACCAGTAC AGGGCCGGGG
AATCTTACTT ATAAATGGGA TTTTGGAGAC GGCGCCACCG CTACAGGGAA TAACCCTGGT
ACGCATCAAT ACATGAAGAA AGGCGTTTAT AATGTTAAAC TCACCGTTAC CAGTGATAAA
GGATGTATTG ATACTAAGTC ATCAGGTGAT ATCAATGTCG CCAATTTCAA AACAGACATA
CAGTTGCCGG CTAAAGTCTG TGAAAACAGC ACTGCGACTT TCACTGCAAA CAACCAGCCT
GTTGCTGATA ACGTCACCTG GAGCGTTGAC AAAGGCAGTA TCATCAGCAA TGGCGCTACT
GCCCTGTTTA CGCCTGACAG TACAGGTACT GTAAAGGTGA CGATGACGGC TGAATATGGT
AAATGTAAAG AGACGATCAC TAAAGAACTG ACCGTTATTG CCGCGCCCAA ACCAGCATTC
ACGACTGAAG TAAAACCTAT CTGTGATGCG CCTGTTACAG TGAAACTCAC CGACAAATCA
GAAGGGGCTG ACAGCTGGCA CTGGGACTTT GGTAACGGCG CGACCTCTAC ACAACAGCAG
CCCGCTCCTG TATATAATAC CTTAGGTTCT TTTGATATCC AGCTTACTGC CAGCAGTGCG
TCCGGTTGCT CCGCCTCCGT ATTGCAGACG GTAAACCTGG CTAAAACGGA AGTCTTTACC
TATGCCAGTA AACCGGAAGG TTGTGTGGGT TTAACGACCC GGTTCAGCGC TTATATCAGT
ATCGGCGACA GTATTATCAG CTATGCGTGG GATCTGGGAG ATGGCAGTAC CTCTACCGAG
GCTAATCCGA CACATACCTA TGATAATGAA GGTACCTATC CTGTATCGCT GACCTATGTA
TCTAAAAATG GGTGTAAAGG AACCGTCAGC CTCTATTCTG TTAATTCCAT TAAAGTATAT
ATCAAACCTA AACCTGATTT TTCCTCTCCG GAAGCACCGG AGATCTGTGG TAGCAATACC
GTACATTTTA AGGGTACAAC GGATGTAGGC AATGGCTGGT CATGGGATTT CGGAGACAAT
ACGGCTCCTG GTTCTTCGCA GAACACCACA CACAGCTACA AGAAACCGGG GACCTATTCT
GTTACGCTGA CCGTTTCCAA TCACAGCTGT ACAGAGAAAA TAACCAAACC TGCTTATATC
ACGGCTGTCA ATCCTTTCCC AAGGTTTGTG ATGCAGTCGG TGGACTGTAA CAACCGGACA
GAAGGTCGCT TTGAGGACAA ATCTACCGGC AATGTGACCA GCTGGAAATG GAGCTGGGGA
GATGGAAAGG AAGAAACTTA TACGACGAAA AGAAGCCTGT TAAAGCACGA CTTTAAAACA
ACAGGCACCT ATAAAGTGAA GCTCACCGTA TCCGACGGCA GCTGTACCAG TTCGGATTCT
ATGAACGTCA CCGTGTATGC GCCATCACCT GTTACTATCA CCACGGGCAA AACAACTTTG
TGTGGCAGTG ACACCCTGAA TGCCAGCGTG ACCTCTATCA ACAAAAGTAT CTACGGTTTA
AATGTATGGT CTTATGTATG GACGTCTTCA GACGGTACGC CTGCTTACTG GAACAGCGCC
GATTATCAGC GTACTGCTTT TACGCATCTG CAGCCAGGTA CTGACACGAT CCGTTTTGTA
GCCTATAACG TACAGGGATG CCCTGATACC AGTAATAAGG TAGTGGTGAA GGTACACGGT
CCGGCAGCTA AGTTCCTAGT TCCCAGTGTG CCTGAATGCC GTGGTGCAAC GCTTGCTTTT
ACTGATAAAA CAGACGTTTC CAAGGGTAAG CCGATCAGTA CCTGGTCCTG GGATTTTGGT
GATGGCACAG CGCCCAAAGT ATTTACAGCA CCACCTTTTA AATACACCTA TAACAAATCG
GGTATTTACT ATCCCAAGTT AACCGTGACC GACCAGGATG GTTGCACCAG TACGGCTGCC
GGTCCGTCAT TGCAGGTGAA TGGTCCTAAT GCTGACTTTA CGCCCAGTGC TTCATTGATA
CCACCAGGTA GTAGCGTACA GTTCTTTAAT AATACGACGG AAACAGGTGG CACGGCCACG
TATCACTGGG ACTTCGGAGA TCATAGCAGT TCTGCCGAAT TCAGTCCAGC TAAACAATAT
CCGGATAAAG GCAGATATAC GGTAAAACTG CTTGTAAAGG ATAATAACGG TTGTATGGAC
AGTGCGCAGA AACCGATCAA GGTATCCAGT GTAGGGGCAG GCTTTACGGT GACTACTGCT
TTTGTAAACA ATAGCGGATG TCCGCCGGTG ATTGCCCGGT TTACCAATAC CTCTACGAAT
TATGTCGATT CTTACTGGGA CTTTGGCGAT GGCAGTTTTT CTACCATCAG CGATCCATCT
CATACTTACA CCTATGCCGG CCGGTATAAG GTGAAACTAC GGGCGATCGG TGAAGCGGGC
AATGAGGATG ACTATGAACA GGAAGTAGAG GTAAAAGGTC CATATGGAAC GATTACGACT
TCGTCGCTGG GTGGTTGTCT GACAAAAGAC ATTGAGTTTA AAGTAAACGC TGTTGCGGCG
GTTAATTTTG CCTGGGACTT TACCGATGGT ATTGTCACTG AAACAACGGA TTCTACAATC
AAACATACCT TTAAAAATCC CGGTATTTAT AAACCACGTC TTATCCTCTC AGACCAGGCA
GGCTGTAAGG GTACAGCTTT CCTGAAGGAT CCGATTGTGA TAGACAGACT GGAAGTGGAA
ATGACGCCAT CGCAGCAGTT TGTATGTGAT GAAGGATGGG TCAGTTTTAC GCCGGCATTC
AACAGTTTCT CTATTGACGA ACTGAAAAAA GAAGCAAAAT ATAAGTGGAC CTATGATGCT
GGTATTGTAG CAGAAAATGA TACGACTGCT ACTCCCCGCT TCTATCTTAA TAAAACCGGG
GAATATAATT TCACATTGAA TACCACGACG GCTTATGGTT GTACGCAGAC GGTCAGCAAA
AAGATCGCTG TTCACCCTAA ACCAGCGATC AGCATCACCG GACCCGCAAA AGCCTGTGTA
GACATTCCTG TAAGTTTTGG CGGTAATGTG ACAAGTCCCC AGGATATGAC CTGGAACTGG
AACTTTGGCA ACGGCAGTAC CGGTAATGTG CAGCAACCTG CTGAGCAGAC TTACAGCCTA
TCCGGTATTT CAGAGGTACA GTTGATTGCT ACAACGAAGG ATGGTTGTAT TGATACGGCT
CACCATAGTA TTAATATAGT ACCTAAACCA GTGGTTACTA CCAGTGTTGG CAACAATATG
TTGTGTCTGG GTAGTAATAC GACGATCAGT GCGACAGGTG GGGTGACGTA TCAATGGTCG
CCTGCGGCAC AGCTGAGTGA TTCCAATGCG GCGGCTCCTG TTGCCAGTCC GCTTGTTAAT
ACAACTTACC AGGTCACTGT AACAGACGCT AATGGTTGTG TCAATACGGG CGATGTAAGT
ATTCGTGTGA TACAGCCTTT TAATATGCGC GCGATGCCTG ATACTGCCAT ATGCCTTGGA
GAAGCGCTGG CATTAAGCGT AGCGGGCGCC GATAATTATG AGTGGAAGGG ACCGGGACTG
GACGATACGC ACAGTGCATC CCCTCATGTC TCTATTACCA CACCTGGTAA TTACACCTTC
CAGGTGAGCG GTCGTGACCT GGCGGGTTGC TTTACACGCG ATACGACAGT GGCAGTGACT
GTACATGCAC CACCCACAGT TGATGCAGGT CCTGATCAGA CAGTCATGGC AGGTAAGCCT
GTTACGCTGG GCAGAAGAGG TAGTCCGGAC ATTGTGAAAT GGAATTGGAG TCCGGCACAA
TACCTGAGCT GTGCGACTTG TGCGACACCG GAGGCCATGC CGAATCTCTC AACCACCTAT
GTCGTAGAAG TAGAAAATAA ATATGGTTGT AAAGCGACTG ATGATGTACT GGTTAAACTG
ACTTGTAACC AGGATGCAAT CTTCCTTCCG AATGCCTTTT CACCAAACAG GGATGGCAAG
AATGAATGGT TCTATCCTAA AGGCAGAGGG GTAAAAGAGG TGGTGAGTAT GCGTGTATTT
GACAGATGGG GGAGCCTGGT GTTTGAAAGG ATGCATTTTC AGATCAATAC TGCTACCTCA
GGATGGGATG GTACCTGGAA GAATGAAGTA GCGCCGATCG GGACTTATGT ATATTCTATT
GAGACGATCT GTGAAGAAGG CGGCAAGTTT ATGTTTAATG GTACCGTGAC GATTGTGCGA
TAA
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| Protein sequence | MSGNALAFAL LWSAMSLTNS VHAQLKADFT PGKTSDCESL ITTFTDKSTG NPVSWQWDFG
NGFTSNEQRP SAAYTSPGIY KILLTVRDAA GNSSNITKTV TVWEKPKPDF TASPATGCMP
LEVKFTDKSD PVNGTMTTYT WDFGDGAIGN GSNPVHVYNN ALSPTITLTV TNSNGCTASK
RISKIVDVSA ALKADFKVSD KFLCTAPGAL SIENTSTGPG NLTYKWDFGD GATATGNNPG
THQYMKKGVY NVKLTVTSDK GCIDTKSSGD INVANFKTDI QLPAKVCENS TATFTANNQP
VADNVTWSVD KGSIISNGAT ALFTPDSTGT VKVTMTAEYG KCKETITKEL TVIAAPKPAF
TTEVKPICDA PVTVKLTDKS EGADSWHWDF GNGATSTQQQ PAPVYNTLGS FDIQLTASSA
SGCSASVLQT VNLAKTEVFT YASKPEGCVG LTTRFSAYIS IGDSIISYAW DLGDGSTSTE
ANPTHTYDNE GTYPVSLTYV SKNGCKGTVS LYSVNSIKVY IKPKPDFSSP EAPEICGSNT
VHFKGTTDVG NGWSWDFGDN TAPGSSQNTT HSYKKPGTYS VTLTVSNHSC TEKITKPAYI
TAVNPFPRFV MQSVDCNNRT EGRFEDKSTG NVTSWKWSWG DGKEETYTTK RSLLKHDFKT
TGTYKVKLTV SDGSCTSSDS MNVTVYAPSP VTITTGKTTL CGSDTLNASV TSINKSIYGL
NVWSYVWTSS DGTPAYWNSA DYQRTAFTHL QPGTDTIRFV AYNVQGCPDT SNKVVVKVHG
PAAKFLVPSV PECRGATLAF TDKTDVSKGK PISTWSWDFG DGTAPKVFTA PPFKYTYNKS
GIYYPKLTVT DQDGCTSTAA GPSLQVNGPN ADFTPSASLI PPGSSVQFFN NTTETGGTAT
YHWDFGDHSS SAEFSPAKQY PDKGRYTVKL LVKDNNGCMD SAQKPIKVSS VGAGFTVTTA
FVNNSGCPPV IARFTNTSTN YVDSYWDFGD GSFSTISDPS HTYTYAGRYK VKLRAIGEAG
NEDDYEQEVE VKGPYGTITT SSLGGCLTKD IEFKVNAVAA VNFAWDFTDG IVTETTDSTI
KHTFKNPGIY KPRLILSDQA GCKGTAFLKD PIVIDRLEVE MTPSQQFVCD EGWVSFTPAF
NSFSIDELKK EAKYKWTYDA GIVAENDTTA TPRFYLNKTG EYNFTLNTTT AYGCTQTVSK
KIAVHPKPAI SITGPAKACV DIPVSFGGNV TSPQDMTWNW NFGNGSTGNV QQPAEQTYSL
SGISEVQLIA TTKDGCIDTA HHSINIVPKP VVTTSVGNNM LCLGSNTTIS ATGGVTYQWS
PAAQLSDSNA AAPVASPLVN TTYQVTVTDA NGCVNTGDVS IRVIQPFNMR AMPDTAICLG
EALALSVAGA DNYEWKGPGL DDTHSASPHV SITTPGNYTF QVSGRDLAGC FTRDTTVAVT
VHAPPTVDAG PDQTVMAGKP VTLGRRGSPD IVKWNWSPAQ YLSCATCATP EAMPNLSTTY
VVEVENKYGC KATDDVLVKL TCNQDAIFLP NAFSPNRDGK NEWFYPKGRG VKEVVSMRVF
DRWGSLVFER MHFQINTATS GWDGTWKNEV APIGTYVYSI ETICEEGGKF MFNGTVTIVR
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