| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4389 |
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| Symbol | |
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| ID | 8360562 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 5458793 |
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| End bp | 5461120 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644966548 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003124036 |
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| Protein GI | 256423383 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0212821 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAAAA AATTTGCTGT ACTGGCTTTA TTCTTTTCCA CGATAAGTAG TCTACAAGCC
CTTGCTCAGC ATAAGTATAC AATTAGCGGT ATCATACGTG ATAAAACGAC AGGGGAAACA
CTGATAGGCG CCTCTATACG TATTCTGCCA CAATCCAGGT ATAACAGCAG CAGTAATAAT
TTCGGGTTCT ATGCGATTGT CGTGCCGGAG GGTTCATATA GATTAGTTGT CAGTTATACT
GGATATAAGC CCGATACGAT CGCACTGACA TTAAGCAATG ATCTTACCAG GAATATATCG
CTGTTGCCTG TCAGCGGACA ACTATCTGAA GTTGTCATTA CATCAGAAAG CACGCATAAC
ACACTGGCGA AGGCACAAAT GGGATTACAA AAACTCAGCA CGGCTGAAAT GGCGAATGTG
CCGGTGTTTC TCGGAGAAAA GGATATTATT AAAACGATAC AGTTATTACC GGGTATAAAG
TCCGCCGGTG AAGGAAGTGG CGGATTCTAT GTACGCGGTG GTAATATTGA TGAAAACCTC
TTGTTATTAG ACGATGCGCC GGTGTATAAT GCGACGCATT TAATGGGTTT CTTTTCTACG
TTCAATTCCG ACGCAATCAA AGACCTCACT TTATATAAAG GCGCTATGCC GGCGGAATAT
GGCGGCCGTC TTTCATCTGT GGTAGATGTC AGGACGAAAG ACGGCAACAA TCAGCAGTTC
CATGGTAGCG GCGGACTTGG TATCATTGCA TCGCGGCTGA ACCTGGAAGG GCCTGTTGTA
AAAGACAAAG GGTCTTTTAT TGTTAGTGGC CGCCGTACTT ATGCCGACGT ATTTCTGAGG
CTCTCTGACA ACAAAGATGT TAAGAAGTCG AATCTTTATT TTTACGATCT CAATGCAAAG
GCCAATTATA ACCTGAATGA TCATAACAGG ATCTTTATTT CGTATTACAA CGGCAAGGAC
AATCTGAAGT TGTCGGATCA ACTGGCCTTG TATTATGGCA ACACCACGGG GACATTCCGC
TGGAACCACA ATTTCAATAG TCATCTGTTC TCCAATACGA CCCTGCTTTA CAGCGATTAC
AACAATAACA TAGAGGTGGC AGATAACTCA AGTAACATGA AGATCATTTC CAAGATCAGG
GATTTTTCGC TGAAAGAAGA TCTGCAATAT TTCATGTCGG GCAATGATAA GCTGAACTTT
GGCTTTACCA CTACGCATCA TAACCTGAGT CCGGGAATCC TTGATGCCAG CGAGTCCTCC
AATTATAATG CGGCGGCACT CGACAAGAAA TATGCGCTTG AAAGTGCCGC TTATATCAAT
CACGAAAAAA GTATGGGGCA ATGGAGTGTG AATTATGGTC TGCGTTTGTC TGTCTTTAAT
GTATTCGGTC CGGGAAATTT TTATACTTAT GACGCGGGAG GAAATATCAC CGATTCCACT
AAGTATGCCA GCGGAGAACT GGTCAAGACC TACATTAACC TGGAACCAAG AGCCGCCGCA
AGTTACCAGC TGGATAGTGT CAGTTCTGTA AAATTCGCCT ATGCCCGGAA TACGCAAAAT
GTGCACCTGA TCAGTAATTC TGCGACTACC AGTCCGACGG ACCTTTGGAT ACTAAGCAGT
CCGAATGTAA AGCCGGAGAT TGCAGATCAG CTTTCCTTCG GTTATTACCG TCATCTGCGT
AATGGCCGTT ATGAGCTGTC TGGTGAAGTA TATTACAAAC AGCTGCAAAA CCAGATTGAC
TTTAAAGATG GTGCGGCGCT CACGATCAAC AATAATGTCG AGTCGCAGTT GTTGTATGGG
AAAGGCAGGG CTTATGGACT GGAGCTGTTT GCAAAGAAGA AGTCCGGCCG CCTGAGCGGC
TGGGTGAGTT ACACCTTATC CCGTACAGAG CGGCAGGTAA ATGCGATCAA TAGCGGTTAC
TGGTATCCGG CGCATCAGGA CCAGACCCAT AATCTTGCGA TTGTATCCAG TTACCAGTTA
AGCAGGAAAG TCGCCCTTTC TGGCAACTGG GTATACAATA CCGGTAATGC AGTGACTTTT
CCGAGTGGCA AGTACGAAAT CAACGGACAG ACGGTATTTC TGTATGCAGA GCGGAATGGT
TATCGTATGC CTGCTTACCA TCGTTTAGAT GTGGGTGTCA CGATAGATGG GAAAAAGGGA
AAAGGCTGGA ACAGCAGCTG GAACTTTTCT GTATATAATG CCTACGGAAA AGAGAATCCG
TATATCATAG AATTCAAGAA TGATCCGGGT AACCCGGCAC GTACTATTGC CCGGCAAACG
GCGCTTTTCC GCTGGGTGCC TTCTATCACC TATAATTTCT CGTTTTAG
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| Protein sequence | MQKKFAVLAL FFSTISSLQA LAQHKYTISG IIRDKTTGET LIGASIRILP QSRYNSSSNN
FGFYAIVVPE GSYRLVVSYT GYKPDTIALT LSNDLTRNIS LLPVSGQLSE VVITSESTHN
TLAKAQMGLQ KLSTAEMANV PVFLGEKDII KTIQLLPGIK SAGEGSGGFY VRGGNIDENL
LLLDDAPVYN ATHLMGFFST FNSDAIKDLT LYKGAMPAEY GGRLSSVVDV RTKDGNNQQF
HGSGGLGIIA SRLNLEGPVV KDKGSFIVSG RRTYADVFLR LSDNKDVKKS NLYFYDLNAK
ANYNLNDHNR IFISYYNGKD NLKLSDQLAL YYGNTTGTFR WNHNFNSHLF SNTTLLYSDY
NNNIEVADNS SNMKIISKIR DFSLKEDLQY FMSGNDKLNF GFTTTHHNLS PGILDASESS
NYNAAALDKK YALESAAYIN HEKSMGQWSV NYGLRLSVFN VFGPGNFYTY DAGGNITDST
KYASGELVKT YINLEPRAAA SYQLDSVSSV KFAYARNTQN VHLISNSATT SPTDLWILSS
PNVKPEIADQ LSFGYYRHLR NGRYELSGEV YYKQLQNQID FKDGAALTIN NNVESQLLYG
KGRAYGLELF AKKKSGRLSG WVSYTLSRTE RQVNAINSGY WYPAHQDQTH NLAIVSSYQL
SRKVALSGNW VYNTGNAVTF PSGKYEINGQ TVFLYAERNG YRMPAYHRLD VGVTIDGKKG
KGWNSSWNFS VYNAYGKENP YIIEFKNDPG NPARTIARQT ALFRWVPSIT YNFSF
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