Gene Cpin_4372 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4372 
Symbol 
ID8360545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5439135 
End bp5440079 
Gene Length945 bp 
Protein Length314 aa 
Translation table11 
GC content48% 
IMG OID644966532 
Productanti-FecI sigma factor, FecR 
Protein accessionYP_003124020 
Protein GI256423367 
COG category[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG3712] Fe2+-dicitrate sensor, membrane component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000128934 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0200354 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAAC CTGAACAGCA TATCATTAAC TCCTTGTTAG AAAAGCATTC TCTTGGTATC 
CTTACACCGG AAGAAAGAGT ATTGCTTGAA AATTGGTATG CTGATTTCCC ACAACAGGGG
GAAGTATGGG TCGACGCCAC AGAGAAAACA GCCATGAAAG ATGCGCTGAA AGCGGAGATA
TTTGACACGA TTGCCACTGT ACAGGTACAT GCGATAAAAC CGCCTGTGCG TCGTATCTGG
TGGCAGGCTG CGGCAGTCAT TGCTGCCCTC GCCGTTATAT CTTTGTTATA TAGCAGGAGA
GAACCGGTGT ATGAGGTTGT GACGGCTGCC GCGGGTAAAG GCATCGTCAG ACTGCAATTG
CCGGATCAAT CCGAAATGTG GCTGGAACCC GGTACTGTTG TGCGTTACCC AAAGGATTTC
GGTAAACGTA ACCGCGAGCT GGAGCTAAAG GATGGAATGG CTTTTTTCTC CGTGGAGGAA
CAAACGGAGC ATCCTTTTAT CGTAAAGATG CCAGGTGGTG TACAGGCAAA AGTGCTTGGA
ACCGGCTTTA CCGTAAAGAA ATATGCACAG TCAGCAGATG TAATGGTAAT GGTTAGTTCC
GGCGCCGTAC AAGTGACTGA TAGTAGTGGC GTATTAGGCA TATGCAAAAG CGGACAGCAA
ATACTTTACC GGCTGACGGA CCATACCGCT ACCCGCTCGG AAGAGATCGT AGAGGACTGG
CGCAATGGTA ATCTGTCAAT CCGTGACGCT TCCTTTCTGG AAATAGCCCG TATCCTGGAA
AACCGTTATG GATTACAGCT GACGTTTAAT CCGGCTAATG TGGCGTCTTA CCGCTTTACG
CTCCGTATCA ACAAGCAAGA CACAGCTGCA GACGTGTTGG AGATGTTGAA AGATATCAGC
GGACTTACAT ACACGCTCAG CGGAAATAAG GTGATCATAC AGTAA
 
Protein sequence
MKQPEQHIIN SLLEKHSLGI LTPEERVLLE NWYADFPQQG EVWVDATEKT AMKDALKAEI 
FDTIATVQVH AIKPPVRRIW WQAAAVIAAL AVISLLYSRR EPVYEVVTAA AGKGIVRLQL
PDQSEMWLEP GTVVRYPKDF GKRNRELELK DGMAFFSVEE QTEHPFIVKM PGGVQAKVLG
TGFTVKKYAQ SADVMVMVSS GAVQVTDSSG VLGICKSGQQ ILYRLTDHTA TRSEEIVEDW
RNGNLSIRDA SFLEIARILE NRYGLQLTFN PANVASYRFT LRINKQDTAA DVLEMLKDIS
GLTYTLSGNK VIIQ