Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4368 |
Symbol | |
ID | 8360541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 5432088 |
End bp | 5434490 |
Gene Length | 2403 bp |
Protein Length | 800 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644966528 |
Product | protein of unknown function DUF214 |
Protein accession | YP_003124016 |
Protein GI | 256423363 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.129517 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAAGA ACTATCTCAA AACCGCTTTC CGCAGTCTTT GGCGCAACAA GCGCTATGCA TTACTTAACA TTACCGGTCT TACGTTGGGT ATCACCGTTT GTCTTGTGAT CTATGTGATC ATTCAATACG AGCAGAGTTT TGATACGTTT CATACAAAGA AAGACCGGAT CTATAGGGTG CTGACAGTAT CACCAGGGGA AAATGGCAAT ACCAATTATA CACAGGCTGT ACCATTTCCC ATACCCACTG TGCTGCCCAA TGACTTTGCA GAATTTGAGA AGGTGACTGG TATTGTACAA ATGGGTAAAA GACTGGTCAC ACTGGAAGAC AGTAAAGGCA ATATTCAACA TAAGTTCAAA CCACTGGTAT ATTTCTTACA GCCTTCGTTC TTTGACATAT TTGATTATAA ATGGTTGGCC GGCAACAAGG CCACCGCGTT AAATGATCCC AGTGCAACCG TTTTGTCACG GTCTACTGCG GAGAAGTATT TCGGCGACTG GCATAAGGCT ATGGGAAAGG TTATCCGGCT TGACCAGCAG TTTAATCTGA CAGTCACAGG TATACTGGAT GATCCTCCTG AAAACACAGA GTTTCAGTTT GATATGGTGG CAACTTATGC CATGATGAAA ATAAATGAGA TAAAGGATTG GGTAACGATA GACGATATTC ATAGTTGTTA TGTATTGCTG CGCCCGGGAC AGGATGTGGC AAAGATTGAC CGGCACCTGA TTGCTTTTTC GAAGAAATAT AAAGACCCGA AAAACACGGC TACACACATG TTACAGCCTT TGGCTGGCGT GCATACAGAT AAACGTACGG GAAACTATAT CGGTCGCGTG GTACCACCGG AACGCATCAG GATGTTGTGG ATGATTGCCG CATTTATCCT GCTGATTGCC TGTGTGAACT TCATCAATCT GGCTACCGCA CAAGCGGTAA ATCGTGCACG TGAGATTGGG GTCCGCAAGG TACTCGGCAG TAACCGCTGG CAGCTGCAAA CACAGTTTCT GTCTGAAACC GCCATACTGG TGCTGCTTTC TTTGCAGCTG GCAATGATAT TAGCGTTATG TCTGTTACCG TTCATCAGCA GTGTCATGAG TCTGCCCCTG GGAGCAGGTA TGCTGACAAG CGGGAATGTA TATCTGTTGC TGTTCGCTAT CTTCCTGGTC GTTACTTTGC TGGCAGGTTT CTATCCTTCT ATTGTAGTAG CTGCTTTTAA TCCGATTAAT GCACTAAAGA GCAGGATCGC CGCCGGCAGA AAGTCAGGAG GTATTTCTTT GCGCCGGGGA CTGGTGGTTT TCCAGTTTAT TATTACACAG GCGCTGATCA TCGGTACACT CATCATCTTG CAACAAATGA ATTACTTTCA CAGTCAATCC ATGGGTTTTA CCCGGGAGGC CATTGTGAAT GTACCTTTCC GTAATGACAG TGCGGGCAAT GCCAAGATTT CGTATCTCCG GGGTCAGCTG GAACATATCA GAGGCATACA GGAGGTAAGC TTTTCGGATG CAGCGCCTTC CAGTGATGGT AACTGGTGGA CCGGCTTTAA ATTTGATCAT CAGACGGAAG ATGTCAAATT TGCTTCGGTG ACACGTTGGG TAGATTATAA CTTTCTGAAC ACCTATGATA TTAAACTCGT AGCAGGCCGC AACCTCACCC GCACCGATTC CGTACGTGAG TTCCTGGTGA ACGAAACCCT GGTACAAAAA CTGGGGCTGA AACCAGCGGA TGTGCTCAAT AAAAACATGG ATGTATGGGA TGGAAGGATT AAAGGACCTA TTGTAGGCGT AGTCAGGGAC TTTACTGCCG GTACGCTGAA AGAAGCCATG GCGCCTGTAT TTATGAGCAA CATCAAACGG CGTTTCAGCA ATGCAGGTAT CCGGCTGGCA GCAGGCGCCG ATGCGCAGGC TTCCATGAAA GCGATCGAAA AACTCTGGAA TGACAACTTT CCCGAACAGA TCTTCGAATA TCAGTTCCTG GATCAGAAGG TGGCAGAATA TTACAGGGAA GAGCGCCAGC TGGCACATTT GTATGAGATC TTTGCAGGTA TCGCCATCTT TCTCAGTTGC CTGGGATTAT ATGGTCTGGC TTCATTCATG GCAGTACAAC GTATAAAGGA AGTTGGTGTG CGCAAAGTAT TGGGCGCCAC TCCTGCACAT ATCGTATACC TTTTCTCAAG GGAGTTTATG CTGTTGATAG GTATCGCCTT TGTAATTGCA GCTCCGCTGG TATGGTACTT TATGCATAAC TGGCTCAATA ATTTTGTGAA CCGGGTAGAT ATTAACTGGA GCGTGTTTGT AGCCGGAGGT ATGACGGCGC TGCTGATAGC TTTGATTACA GTGAGTTCGC AAGCTATACG GGCGGCGATG ATGGACCCGG TGAATAGTTT GAAAGCAGAG TGA
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Protein sequence | MLKNYLKTAF RSLWRNKRYA LLNITGLTLG ITVCLVIYVI IQYEQSFDTF HTKKDRIYRV LTVSPGENGN TNYTQAVPFP IPTVLPNDFA EFEKVTGIVQ MGKRLVTLED SKGNIQHKFK PLVYFLQPSF FDIFDYKWLA GNKATALNDP SATVLSRSTA EKYFGDWHKA MGKVIRLDQQ FNLTVTGILD DPPENTEFQF DMVATYAMMK INEIKDWVTI DDIHSCYVLL RPGQDVAKID RHLIAFSKKY KDPKNTATHM LQPLAGVHTD KRTGNYIGRV VPPERIRMLW MIAAFILLIA CVNFINLATA QAVNRAREIG VRKVLGSNRW QLQTQFLSET AILVLLSLQL AMILALCLLP FISSVMSLPL GAGMLTSGNV YLLLFAIFLV VTLLAGFYPS IVVAAFNPIN ALKSRIAAGR KSGGISLRRG LVVFQFIITQ ALIIGTLIIL QQMNYFHSQS MGFTREAIVN VPFRNDSAGN AKISYLRGQL EHIRGIQEVS FSDAAPSSDG NWWTGFKFDH QTEDVKFASV TRWVDYNFLN TYDIKLVAGR NLTRTDSVRE FLVNETLVQK LGLKPADVLN KNMDVWDGRI KGPIVGVVRD FTAGTLKEAM APVFMSNIKR RFSNAGIRLA AGADAQASMK AIEKLWNDNF PEQIFEYQFL DQKVAEYYRE ERQLAHLYEI FAGIAIFLSC LGLYGLASFM AVQRIKEVGV RKVLGATPAH IVYLFSREFM LLIGIAFVIA APLVWYFMHN WLNNFVNRVD INWSVFVAGG MTALLIALIT VSSQAIRAAM MDPVNSLKAE
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