Gene Cpin_4342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4342 
Symbol 
ID8360515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5400484 
End bp5400762 
Gene Length279 bp 
Protein Length92 aa 
Translation table11 
GC content42% 
IMG OID644966503 
ProductRNP-1 like RNA-binding protein 
Protein accessionYP_003123991 
Protein GI256423338 
COG category[R] General function prediction only 
COG ID[COG0724] RNA-binding proteins (RRM domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.621123 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00155097 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATATAT ACGTGTCCAA TCTGAGTCCT TTTATTGTTA ACGAGGACCT AAATAATCAT 
TTTTCCAGAT ACGGAGTGGT GAGTTCAGCA AATGTTATTA TCGATAAATT TACGAATCGC
AGCAGAGGAT TTGGCTTTGT CACCATGCCA AATGATACTG AAGCGGAAAA AGCCATCCAG
GAAATGAATG GTTCATTAAT AGATGGGAAA ACGATTGCTG CCAGTCAGGC CAGACCCAGG
GAAGAGAAAC CTGGCAGGTC CTACAATAAT CGCTGGTGA
 
Protein sequence
MDIYVSNLSP FIVNEDLNNH FSRYGVVSSA NVIIDKFTNR SRGFGFVTMP NDTEAEKAIQ 
EMNGSLIDGK TIAASQARPR EEKPGRSYNN RW