Gene Cpin_4338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4338 
Symbol 
ID8360511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5396507 
End bp5397799 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content42% 
IMG OID644966499 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003123987 
Protein GI256423334 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.743404 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000431263 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGATAATC ATATTAATTT GAACAACGAC CTGCTGGAAG AGCTGGCTGA GACACGAAGA 
CGCCTTGCTG AAGCAGAAGA GACCATTGAA GCCATCCGAA CTGGTCAGGT GGATGCCCTG
GTTGTACAAC AGGGGGGTAC GCATCAGCTG TACACCTTGC AAACGGCTGA TCACGCTTAT
CGTATGTTCA TAGAAAAAAT GAATGAAGGA GCAGTGACGC TGAACAGAGA TGGCGTCATT
CTATACGCTA ATTCGCGGTT TTCGGACATG CTGGCACTTC CATTAATGTA TATTATCGGC
CAGCCGTTGT CTACGTTTGT TGCTCCTCAT TCCCGGTCAA TTTATATGGA TTTATATGAA
TCCTGCTGGA AGGAAGATAC GAAGGGGGAA GTGGATCTGT TGCGTCATGC ATCATTTGTT
CCGACAAAAT TGTCATTGAA CCGGCTGGAA CTCGCCAGCG AAATGTCCAT GAATATTATC
CTCACTGATC TTTCCGAGCA GAAAAATACG CAAAGGATAC TTGAAGAAAA CAACCGGCAA
CTGGAGCAAC TGAACAGCAC TCTTGAATCG AGCAATCACG ATCTCCAGCA GTTTGCATCC
GTCGCCTCTC ATGATCTGCA GGAACCACTG CGTAAAATAC AAATGTTTGG AAATTTCTTA
AAAACCGCCG GCGTTTTGCA ACCTGCCGGT AAAGAATATC AATACCTTGA AAAGATCTTG
AAGTCAGCAG AACGTATGAA GACATTGATT ATCGATGTGT TGAATTACTC AAGATTATCC
ATTAATACAG GTGAATTTCT TCCCGTTGCG CTTGATGAAC TGGTACAGGA AATTCTGGAA
GATTTTGAGT TGCTTATCAA AGAAAAGGAT GCGCAAATCA GTGTTGCCAA ACTGCCTGTA
CTTGATGTAA ATAAAGGGCA GATCAGACAG ATGTTTCAAA ATCTCATATC CAATGCACTG
AAATTTTCCA ATCCGGGAAT AAGGCCGGTT ATAAAAATAG GAGGCTGTTT TCTTGCTGAT
AAAAATTTCG ATAGTCCTGA AAGTCCGGAA GGAAGCTATT ATATGGTCAG TGTAGAAGAC
AATGGAATAG GCTTTGAAGA AAAATATATA CCGAATATAT TTGCGCTTTT TGAACGACTG
AACAGTAAAG AGGCTTTTGA GGGAACAGGC ATTGGTCTTG CAATTGCAAA AAAAATAGTA
GAGAAACACA ACGGAGTTAT TCATGTTAAA AGTAAAGTCC GGTGCGGAAG TAGATTTCAG
ATCATTATTC CAGTAACGCA CAGTATCAGC TAA
 
Protein sequence
MDNHINLNND LLEELAETRR RLAEAEETIE AIRTGQVDAL VVQQGGTHQL YTLQTADHAY 
RMFIEKMNEG AVTLNRDGVI LYANSRFSDM LALPLMYIIG QPLSTFVAPH SRSIYMDLYE
SCWKEDTKGE VDLLRHASFV PTKLSLNRLE LASEMSMNII LTDLSEQKNT QRILEENNRQ
LEQLNSTLES SNHDLQQFAS VASHDLQEPL RKIQMFGNFL KTAGVLQPAG KEYQYLEKIL
KSAERMKTLI IDVLNYSRLS INTGEFLPVA LDELVQEILE DFELLIKEKD AQISVAKLPV
LDVNKGQIRQ MFQNLISNAL KFSNPGIRPV IKIGGCFLAD KNFDSPESPE GSYYMVSVED
NGIGFEEKYI PNIFALFERL NSKEAFEGTG IGLAIAKKIV EKHNGVIHVK SKVRCGSRFQ
IIIPVTHSIS