| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4338 |
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| Symbol | |
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| ID | 8360511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5396507 |
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| End bp | 5397799 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644966499 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_003123987 |
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| Protein GI | 256423334 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.743404 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.000431263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGATAATC ATATTAATTT GAACAACGAC CTGCTGGAAG AGCTGGCTGA GACACGAAGA
CGCCTTGCTG AAGCAGAAGA GACCATTGAA GCCATCCGAA CTGGTCAGGT GGATGCCCTG
GTTGTACAAC AGGGGGGTAC GCATCAGCTG TACACCTTGC AAACGGCTGA TCACGCTTAT
CGTATGTTCA TAGAAAAAAT GAATGAAGGA GCAGTGACGC TGAACAGAGA TGGCGTCATT
CTATACGCTA ATTCGCGGTT TTCGGACATG CTGGCACTTC CATTAATGTA TATTATCGGC
CAGCCGTTGT CTACGTTTGT TGCTCCTCAT TCCCGGTCAA TTTATATGGA TTTATATGAA
TCCTGCTGGA AGGAAGATAC GAAGGGGGAA GTGGATCTGT TGCGTCATGC ATCATTTGTT
CCGACAAAAT TGTCATTGAA CCGGCTGGAA CTCGCCAGCG AAATGTCCAT GAATATTATC
CTCACTGATC TTTCCGAGCA GAAAAATACG CAAAGGATAC TTGAAGAAAA CAACCGGCAA
CTGGAGCAAC TGAACAGCAC TCTTGAATCG AGCAATCACG ATCTCCAGCA GTTTGCATCC
GTCGCCTCTC ATGATCTGCA GGAACCACTG CGTAAAATAC AAATGTTTGG AAATTTCTTA
AAAACCGCCG GCGTTTTGCA ACCTGCCGGT AAAGAATATC AATACCTTGA AAAGATCTTG
AAGTCAGCAG AACGTATGAA GACATTGATT ATCGATGTGT TGAATTACTC AAGATTATCC
ATTAATACAG GTGAATTTCT TCCCGTTGCG CTTGATGAAC TGGTACAGGA AATTCTGGAA
GATTTTGAGT TGCTTATCAA AGAAAAGGAT GCGCAAATCA GTGTTGCCAA ACTGCCTGTA
CTTGATGTAA ATAAAGGGCA GATCAGACAG ATGTTTCAAA ATCTCATATC CAATGCACTG
AAATTTTCCA ATCCGGGAAT AAGGCCGGTT ATAAAAATAG GAGGCTGTTT TCTTGCTGAT
AAAAATTTCG ATAGTCCTGA AAGTCCGGAA GGAAGCTATT ATATGGTCAG TGTAGAAGAC
AATGGAATAG GCTTTGAAGA AAAATATATA CCGAATATAT TTGCGCTTTT TGAACGACTG
AACAGTAAAG AGGCTTTTGA GGGAACAGGC ATTGGTCTTG CAATTGCAAA AAAAATAGTA
GAGAAACACA ACGGAGTTAT TCATGTTAAA AGTAAAGTCC GGTGCGGAAG TAGATTTCAG
ATCATTATTC CAGTAACGCA CAGTATCAGC TAA
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| Protein sequence | MDNHINLNND LLEELAETRR RLAEAEETIE AIRTGQVDAL VVQQGGTHQL YTLQTADHAY
RMFIEKMNEG AVTLNRDGVI LYANSRFSDM LALPLMYIIG QPLSTFVAPH SRSIYMDLYE
SCWKEDTKGE VDLLRHASFV PTKLSLNRLE LASEMSMNII LTDLSEQKNT QRILEENNRQ
LEQLNSTLES SNHDLQQFAS VASHDLQEPL RKIQMFGNFL KTAGVLQPAG KEYQYLEKIL
KSAERMKTLI IDVLNYSRLS INTGEFLPVA LDELVQEILE DFELLIKEKD AQISVAKLPV
LDVNKGQIRQ MFQNLISNAL KFSNPGIRPV IKIGGCFLAD KNFDSPESPE GSYYMVSVED
NGIGFEEKYI PNIFALFERL NSKEAFEGTG IGLAIAKKIV EKHNGVIHVK SKVRCGSRFQ
IIIPVTHSIS
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