| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4317 |
|---|
| Symbol | |
|---|
| ID | 8360490 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5374877 |
|---|
| End bp | 5375707 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644966478 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_003123966 |
|---|
| Protein GI | 256423313 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.191598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.130895 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAC AAACAGGAAA TGTATTAGTA ACGGGTGCAA CGGGTCTTGT AGGAGCCCGT
CTTGTACCAC GGTTGATAGC AGCAGGTTGG AATTGTCGCG TATTGGTGCG CAAGGGGAAA
GATGTGCCGG CCGGGGCTAT CCACGTAACA GGAGACTTAT TGGATGCAGC TTCACTCACA
CAGGCAGTAA AAGATGTGTC GGCAATCATC CACCTTGCAG CAGTATTCCG TACACAGGAC
ACAGATCTGA TCTGGCAAAG CAACCTTCAA GGTACACGTA ACCTCATTGC TGCGGCAAAG
ATCCACGCTC CCGATGCACG CTTTATGCTG GCAAGTACAG CCCATGTTTA CAATATCAAT
AATCCTCATC CGGGACGTGA AGACGACATG GTGGCTCCTG AACATGCATA CCCTGCCAGT
AAGGTTGCAG CAGAGAAAGA ACTGCGCGAA AGTGGGTTGA ACTGGTCCGT CCTACGCTTT
CCTTTTGTAT ATGGCGACGG AGACGGACAC CTGGAAATGT TACCCAAGCA TATAATTCCG
GCTAAATGGC ATCCTGCCCA GAGAATGAGT GTAATCCATC ATCGTGACAT TGCTACTGCT
ATAGATATGG CCCTTGCTGG CACTTTTGAC GGGCGTATCG TAAATATTGC AGATGAATCG
TCTATGTCGG TCTATGAGTT ATTGCAACTT GTGGGTACCA CTATGGAGTC GTCTGCTGAG
CCGCTTCAAA ATCCCTGGTA TCTCTATGCA GATACTTCTC TTGCGCGTAG TCTGGGCTTC
CAGCCTAGCG TCAGAACGGT ATATCAGGCG ATACAGGAGC AGCTGCTCTA A
|
|---|
| Protein sequence | MNRQTGNVLV TGATGLVGAR LVPRLIAAGW NCRVLVRKGK DVPAGAIHVT GDLLDAASLT
QAVKDVSAII HLAAVFRTQD TDLIWQSNLQ GTRNLIAAAK IHAPDARFML ASTAHVYNIN
NPHPGREDDM VAPEHAYPAS KVAAEKELRE SGLNWSVLRF PFVYGDGDGH LEMLPKHIIP
AKWHPAQRMS VIHHRDIATA IDMALAGTFD GRIVNIADES SMSVYELLQL VGTTMESSAE
PLQNPWYLYA DTSLARSLGF QPSVRTVYQA IQEQLL
|
|---|
| |