Gene Cpin_4288 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4288 
Symbol 
ID8360461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5347424 
End bp5348212 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content42% 
IMG OID644966450 
Productalpha/beta hydrolase fold protein 
Protein accessionYP_003123938 
Protein GI256423285 
COG category[R] General function prediction only 
COG ID[COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)  
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.262225 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.18848 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATA AAAAAGTCAT ATTACTATTG CACGGATACC CGCAAACCAG TTACGCATGG 
CGGTTTGTAA CGCCTCTCTT AGCAAAAGAA GGATATAAAG TCATAGCTCC TGACTTACCC
GGACTAGGCG ATACTGCTAA TCCCGTTTCT TTTGATAAAA AAACAATCGC AGTTCTTATC
CATGATATGA TGAAAGCAGA TGGTTATAAT GACATTTATC TTGTCGGACA TGACTGGGGC
GCCTCTGTTG CGTATAGCTA TGCTGCACAA TTTGGTGAGG AAGTGAAAAG GCTGGTCCTC
ATGGATGTTC CTCCTGTAGG GGAATATCTT AAAAAAACAC CCTTACTCCC ACCCAATAAC
AAGGGCCTTT GGTGGTTTGC GTTTCACCAG GTACATCAGT TACCCGAATT ACTCGTCGCA
GGGAAGGAAA GAGAATATCT GCAATGGTTT TATCATAACT CTTCGTTCAA AAAAGAGGTA
TTTGATAATG ACACTATCAA TGAATACTAC CGAACTTATA GCCAAGCTGA CAAAATGAGC
AATGGCTTTA ACTATTACCG CACGATATTA CAGGATATCA ATGATAACAA AGCTTTCGGA
CAAAATCTGC TTCAAATGCC CGTATTAGCC ATCGGCGGTG AACATGGGCT CGGTCAGCTC
GCTTACAATA TTACCAAACC GCTCGTTGCC GACATTACCG GGGCCGTTAT TCCCGATTGC
GGACATTATA TACAGGAAGA ACAGCCGGAT TTCTTAGTAA AAGAACTGAT CCAGTTTTTC
AGCAAATAA
 
Protein sequence
MENKKVILLL HGYPQTSYAW RFVTPLLAKE GYKVIAPDLP GLGDTANPVS FDKKTIAVLI 
HDMMKADGYN DIYLVGHDWG ASVAYSYAAQ FGEEVKRLVL MDVPPVGEYL KKTPLLPPNN
KGLWWFAFHQ VHQLPELLVA GKEREYLQWF YHNSSFKKEV FDNDTINEYY RTYSQADKMS
NGFNYYRTIL QDINDNKAFG QNLLQMPVLA IGGEHGLGQL AYNITKPLVA DITGAVIPDC
GHYIQEEQPD FLVKELIQFF SK