Gene Cpin_4245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4245 
Symbol 
ID8360418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5308277 
End bp5309056 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content50% 
IMG OID644966412 
Productprotein of unknown function DUF323 
Protein accessionYP_003123900 
Protein GI256423247 
COG category[S] Function unknown 
COG ID[COG1262] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.275771 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.877296 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATATTCT CACTACTGAT AAGTTTATTC CTGCCTGATA CATCCTTTGT ACAGGTACCC 
GCCGGAGACT ATTGGGTCGG TGCTAAAGGG CATGCCCTTA ATCCCGCCAG ACAGGTCCAT
GTAGAAACCT ACGCTATCGG TGCTACGGAA GTCACTAATC AGCAGTTTGC AGCATTTGTG
GCCGCTACGT ATTATGTCAC GGATGCGGAG CGGCTACACA ATGCGATGGT CTTCGAACCA
GGACTGAGGG AATTCCGCTG GCTGGAGGAC AGTACTGCCT ACTGGCGGTA TCCTAACGGC
GTGAGCCGCG GTGGTATTGA AGACAAAATG CAACATCCTG TTACCACCAT CAGCTACAAT
GACGTTCAAG CCTATTGCGA ATGGGCACAG GTAAGGCTCC CTTCCTTCGA AGAATGGGAG
ATCGCTTCCC GCGCAGGCGC CAGAACCACC TATTTTTGGG GAGAAGATAG CCGGAAGATC
GGTCGTTATG CTAATATCTG GCATGCACAT GACCACCTGG AATCAGACAG CTCCGACGGA
TATATGTATA CTGCTCCTGT TGCCAGTTTC CAAGCTAATC GCTGGGGGCT ATACGACATG
TATGGAAATG TATTCGAGTT TTGCGAAGGG CATCTCAAAG AGGAGAAAAC AGTACATGCC
CGGGGCGGCT CATGGTGGTG TAGTCAACAC TCCTGTCACT ATTTTAACTC TGTAGATATT
GGAAGAGTGC ATAGAAGGGC ATCCTTTAGT AATCAGGGCT TCAGGGTGGT CAAAAAGTGA
 
Protein sequence
MIFSLLISLF LPDTSFVQVP AGDYWVGAKG HALNPARQVH VETYAIGATE VTNQQFAAFV 
AATYYVTDAE RLHNAMVFEP GLREFRWLED STAYWRYPNG VSRGGIEDKM QHPVTTISYN
DVQAYCEWAQ VRLPSFEEWE IASRAGARTT YFWGEDSRKI GRYANIWHAH DHLESDSSDG
YMYTAPVASF QANRWGLYDM YGNVFEFCEG HLKEEKTVHA RGGSWWCSQH SCHYFNSVDI
GRVHRRASFS NQGFRVVKK