| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4183 |
|---|
| Symbol | |
|---|
| ID | 8360356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5228535 |
|---|
| End bp | 5229020 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644966352 |
|---|
| Product | protein of unknown function DUF296 |
|---|
| Protein accession | YP_003123841 |
|---|
| Protein GI | 256423188 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1661] Predicted DNA-binding protein with PD1-like DNA-binding motif |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.161362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0166501 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TCGCTTACTT CCTGATACAG TTGTTATCAG TCGGACTGGC AGCCAACGCG
CAATCTCCTT ATGTGAAAGT GCCCGCAGGG TATCTGATGG TATTACAGCA GGGTGATGAC
CTTTTTGCCC AACTTGAAGC ATTTATGCTG AAGGAGAACA TCCCGGCGGC TAACTTCACC
GGAATGGGCT TTGTGAATGC GAAATTTGGC TTTTTTAATC AGCAGACCAA GCAATATGAT
CCCAGGTCAT TTGATAACGT AGAACTGGCC AGTATGCAGG GGAGCATTGC CTGGCAACAG
GATACCGTAT CCATTCACGC ACATGGGGTG GTTACCGACA ACACCTTTCA GGCTTACGGT
GGACATATGC TGGGCGCCAC CGTGAGTACA GGATCTGTAG AGATCATGAT TACGGTGCAC
GATAAGCGGT TTAAAAGAGT AAAAGATGAA AAGATCGGGG CGAATGTGTT ACAACTGAGG
GAGTAA
|
|---|
| Protein sequence | MKKIAYFLIQ LLSVGLAANA QSPYVKVPAG YLMVLQQGDD LFAQLEAFML KENIPAANFT
GMGFVNAKFG FFNQQTKQYD PRSFDNVELA SMQGSIAWQQ DTVSIHAHGV VTDNTFQAYG
GHMLGATVST GSVEIMITVH DKRFKRVKDE KIGANVLQLR E
|
|---|
| |