| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4178 |
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| Symbol | |
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| ID | 8360351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 5223331 |
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| End bp | 5223912 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644966347 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_003123836 |
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| Protein GI | 256423183 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.804313 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.070484 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCAG ATACCGATAC GGAACTGTTA CAAAAAATGA GGCAAGGCGA CGAAAGCGCC
TTCCGGCAGC TATACGACCG GCATAGCAGG CAGGTGGCTG CGTTTATTTT CCATCTGACA
CATTCTGCTG TTGACGCAGA AGACATTCTC CAGGAGACTT TCCTTACACT CTGGACAAGC
AGGGAACAGC TGCCCGCTAT CGTCAATCCA GCCAGTTATA TCTTTATCAT CGCCAGGAAT
AAAACCCTGG ATCATCTCCG AAAAATAGCC CGGCAACAGA AACTGGTGGA TCATGTGTGG
GCCAATATAT CCGCCACTGC AGATGCCCTC GATCTGGAAC TGGATGCCCG GGAAAGCCAG
CAATTGATCA ATACCGCCCT TTCACGGCTC AGCGAGCAGC AACGTACTAT TTTCCGCCTG
AGCAGACAGG ACGGACTTGA TCATGCCACC ATCGCCGACA AACTGCATTT ATCCAAGAGC
AGGGTTAAAA ACGTACAGGT GGAAACACTC CGCTTCATAC GTCAGTTTCT GTCACAACAT
GCTGAATTTC TGTTGCTTCT CTGCCTCCTG AGCAACTTCT GA
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| Protein sequence | MQPDTDTELL QKMRQGDESA FRQLYDRHSR QVAAFIFHLT HSAVDAEDIL QETFLTLWTS
REQLPAIVNP ASYIFIIARN KTLDHLRKIA RQQKLVDHVW ANISATADAL DLELDARESQ
QLINTALSRL SEQQRTIFRL SRQDGLDHAT IADKLHLSKS RVKNVQVETL RFIRQFLSQH
AEFLLLLCLL SNF
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