| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4162 |
|---|
| Symbol | |
|---|
| ID | 8360335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5193707 |
|---|
| End bp | 5195221 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644966332 |
|---|
| Product | protein of unknown function DUF839 |
|---|
| Protein accession | YP_003123821 |
|---|
| Protein GI | 256423168 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0755591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0467727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCTG GATATTGCGA GACTCAAATC TATCAACCCA TGAAGCTTAA TTCTCTGATG
ACCCGTATCA GTCCGCTGGT GGCAGCGGCA CTGATAGCAA GCTGTAGCAA TGACACAATT
GACAACACCA AGACACCTGA AACAGGGTCA GGTATTGAGG CACATTCCAA CACGCCTTCC
CTGGTAAAAT CGCTCTCCGG CTTTGACAAC CTGAAAATTT ATCCGCTGAT CAGCAGTGAT
GATACCCTGC CTGGTTCACC GGCATTCAGA TACGGTGCAC AGCCAGATGG TGCTGGTATG
ATGAAAGATC CTAACGGAGA GGGTTACATC ATGATCAATA ACCACGAGAT CCTCTTTTCT
GTGTCGCGCG TATACCTGGA TAAGTTCCTG AAACCGGTAA AAGGCGAATA CATTGTAGAC
GCTGAAGGCG GTAGTATGCG TCTTTGCTCT GCTACACTGA CCAGTGCTGC AGAACATGGC
TTTGGTCCGA TGTTCCTCAC TGCCGGTGAA ACGGATGGTG AATCAATGAT CCACGCGATC
GATCCACTGG GTTCCGCTGA CCTGAAAAAG TCAAACCGTA CCAAACCTGC TTTAGGTAAA
TGCAGCGCTG AAAACGCCGT GCCTTTATCC AAAAATGCAT TCCCTGGTAA GACTGCTGTC
TTCATTGGTG AAGATGAAAG CAGCCGTCAG GGTCTTGGTC AGGTAAACCT TTACCTGTCC
AATACCGTAG GTGACCTGAG TAACGGTACG CTGTATATGT TGCGTCGTCT TGATCAGAAC
ATCGTAGAAA CGGACATGGA AGTGGGCAAG TCATATGATG TGGAATTCGT AGCCTATGAA
AACGTGCCAA CCAGCACCGG CGCTGAACTG GCTGCCCAGA CAGTTGCTAA AAAAGCTATC
CAGTTTGCCC GTGTGGAAGA CCTGGATTAT GGTAAAGGTT CTGTTGAAAA TAACCGTAAA
CTGTACTTCA CTGCTACCGG TGTAAGCCAG TCCGATAAGA AAACACCTGT TGCCGGTCTG
ACCATGTGGG GCCGTGTATA CCAGCTGGTG CTGGATGCTG CTAATCCACT GAAAGGTAAA
CTAACGCCAT TACTGGATGG TAATGTTGAT CCGGGTAACA GCGTAGTAAA TCCGGATAAC
CTTTGTGTAA CGGAGAACTT CGTCTACATC CAGGAAGATG GCGATTCTTA TTATGCTGAT
AACAAACACG ACGGTCGTAT CTGGCAGTAT AATATCGCTA CCAAAGCGCT GAAACCTATG
CTGGAAATGG ACCAGCGTCG CAATGATGCT GCATTCAACA GCAAATACAA CCCGGCCAAT
GAAACCCGCC TGGGCTCCTG GGAATATGGC GCTATGTATG ACATTTCTGA CCTGGTGGGT
AAACCAAACA CCTTTGTGGT AAATATTCAC CCGCACACCT GGACGGACAA TAAATTTGCC
AACGCAGATG GTAGCGGACT GACAACCAAC AAAGAAGGCG GTCAGACTGT GATCATCACC
GGTATCGAAA AATAA
|
|---|
| Protein sequence | MGAGYCETQI YQPMKLNSLM TRISPLVAAA LIASCSNDTI DNTKTPETGS GIEAHSNTPS
LVKSLSGFDN LKIYPLISSD DTLPGSPAFR YGAQPDGAGM MKDPNGEGYI MINNHEILFS
VSRVYLDKFL KPVKGEYIVD AEGGSMRLCS ATLTSAAEHG FGPMFLTAGE TDGESMIHAI
DPLGSADLKK SNRTKPALGK CSAENAVPLS KNAFPGKTAV FIGEDESSRQ GLGQVNLYLS
NTVGDLSNGT LYMLRRLDQN IVETDMEVGK SYDVEFVAYE NVPTSTGAEL AAQTVAKKAI
QFARVEDLDY GKGSVENNRK LYFTATGVSQ SDKKTPVAGL TMWGRVYQLV LDAANPLKGK
LTPLLDGNVD PGNSVVNPDN LCVTENFVYI QEDGDSYYAD NKHDGRIWQY NIATKALKPM
LEMDQRRNDA AFNSKYNPAN ETRLGSWEYG AMYDISDLVG KPNTFVVNIH PHTWTDNKFA
NADGSGLTTN KEGGQTVIIT GIEK
|
|---|
| |