| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4110 |
|---|
| Symbol | |
|---|
| ID | 8360283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 5115403 |
|---|
| End bp | 5116377 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644966282 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_003123771 |
|---|
| Protein GI | 256423118 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.719196 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00235403 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAA GAAGAATTTT TATGCAGCAG GCTGGCTTAA TAGCAGCCGG ATTGATGATC
AATCCCTCAG GTATTTTCAG TCGAGGCAGA GAAAATACAG TGAACAGGAT AGGAATTCAA
TTGTACACCC TGCGCGACCA GCTCGCGAAG GATGTTAAAG GTACCATCGC CAAAGTAGCG
GAAATAGGCT ACAACCACGT GGAAACCTTC TACGGTTACA AGGCGCCTGA CCAGAAAGAG
CAGTTCTGGG GCCTGGATCC CAAAGGACTG AAAGCCTTAC TGAAAGAACA TAAGCTGCTC
ACCCACAGCG GTCATTATCA GCTGAATGAC TACCTGACCC GTGGCAATGG GAACGATGAA
GCACTGAAAG TCCAGATTGA TATTGCAAAG GAACTGGGAC AACAATACCT GGTTGTACCT
GTACCTCCGA TAGCGTTGTG GGACAAACTG ACTGCGGACG ACTATAAATT CATCGCTGAA
CAACTGAATA AAGCAGGAGA ACTGGCAGGA AAATCTGACC TGAAGGTGGG CTATCATAAC
CATTTCTGGG AATTCAGAAA CCAACCTGAC GTGAATACCA CCGGTTATGA AATCATGCTG
AAAGGTACTG ATCCTTCTTT AGTAGCATTT GAACTGGATT TATTCTGGGC TATCAAGGCA
GGCATGGACC CAGTAAGACT GTTTAAGGAA CATCCTGGCC GTTTTGCGAT GTGGCATGTG
AAAGATATTG ATAAGGCAGC CCAGGAAAAG ATTGCGGGTG GCGACAATGA TAAGAAAACG
TCCATGGAGA TACTGCCCAA AGTGAAATTT GCGGAAGTAG GTACCGGGGC TGTGAAGTTT
AAGGAGATCT TTGACAATGC AAGCCTTGCC GGTGTTAAAT ACGCCTTTGT CGAGCAGGAC
CAGATCTCTA TTGATCCATT TGATAGTATC AAAAAGAGCT ATGGGTATGT AAAGAGCAAT
TTGCTGAGAC GATAA
|
|---|
| Protein sequence | MSSRRIFMQQ AGLIAAGLMI NPSGIFSRGR ENTVNRIGIQ LYTLRDQLAK DVKGTIAKVA
EIGYNHVETF YGYKAPDQKE QFWGLDPKGL KALLKEHKLL THSGHYQLND YLTRGNGNDE
ALKVQIDIAK ELGQQYLVVP VPPIALWDKL TADDYKFIAE QLNKAGELAG KSDLKVGYHN
HFWEFRNQPD VNTTGYEIML KGTDPSLVAF ELDLFWAIKA GMDPVRLFKE HPGRFAMWHV
KDIDKAAQEK IAGGDNDKKT SMEILPKVKF AEVGTGAVKF KEIFDNASLA GVKYAFVEQD
QISIDPFDSI KKSYGYVKSN LLRR
|
|---|
| |