Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4099 |
Symbol | |
ID | 8360272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 5100777 |
End bp | 5102579 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644966271 |
Product | histidine kinase |
Protein accession | YP_003123760 |
Protein GI | 256423107 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.056511 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.000691518 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGTCTAT TTCAACACAT CTCTACAACT GGCTATGATA GAGTGACCGA TGAAGACCAA CGACGATCAC TGAAAATTGT AAACACCCTG GCACTTGTAA CTGCGCTGAT GGCAGGTATA TTTGGCCTTG GCTGTTATGT TATGACATGG GATCTGCAGC TATCAGCACC TGCTCTCATC GAATCCCTCC TGCTTGCCGC CGTTATTGTT ACAAACCGTT TCGGAAAGTT TAGCTCCGCC GGACTGGCAC TGATCCTGAT CAACAACCTC AGTATCCAGT ACTACAGCGC TATCATGGGA CGGGTAACGG AAGTGCATCT CCTTTTTATT TTCCTGGTGG GCCTCTCACT GCTGGTCTTT GAGAAAGACA GGCGAATGCG TGCGCTTAGT ATAGGATTGA CCATCCTGGC ATTCCTCGTC GGCGAGATCA ATATGTACAA TGGTTTCATC ACACCTATTG TTACTGCTGA AAAGCGTTCT CCGGTACAGT TCGTTATAAG GTGGGTGACT ATCCCCAGTA TACTGATACT CGATCTTACG GTGATCTATT ACTATGTAAG AAACATGGAG CGTCAGCGTA AAAAGGAAAT GCGGCAGGTA CAGGAAATGC TGCAAACGGT TAAGGAACAC AATCGCGAAC TGGAAATCCT GACTGCGCAA CTGGCGAAGG CCACAGACGC TAAAACGGTC TTTGTAAGAG AGACCAGTCA TGAGATCCGT ACACCGTTGA ATGCTATTTT CGGAATTAGT CAGCTCCTGC AGCTAAAAGT AGAACAGGAC CGCTCTCTCG CTCCCATCCG TCAACTGGCA GATCATCTGT ATGCTGCCAG TTACAACACT CGTGAGATTA TCAATAATGT ACTGGAATTC TCCCGTATCG AAGCGGGTAA GATCGATACA CCTCAACTGG AAACATTGAA TGTCCGGGAA TGGCTGGAAG GGATTGTCAA TATGCACCAG TACGTCGCCA GTGTGAAGAC GGTGCGTATC AGGGCTTCAG TAGCAGACGA TCTTCCGCAG CTGATCAGTG GCGATAAAAT CCTGCTGAGT AAGACCTTGA ACAACCTGTT ATCCAACGCA ATCAAATTCA CCGCACAGGA AAGCACGATC ACACTCGATG TATTCAGAGA TGATAATAAA TGGTGTTTGC AGGTCACAGA TCAGGGGGAA GGCATCCGTG CAGACAGGTT ATCTACCATT TTCAATGCTT TCGTCACTGA ACGGAACATC TTTCTGGAAG GTACAGGTCT GGGATTGCAT ATCACCCGTC ACCTCGCTAC ATTAATGGGC GGCGATATTA AAGTGTATAG CGTAATGGGC AAGGGCACGA CATTCACCGT CAACCTTCCC CTGCAGGTAC CTGCGGAGAC TGCCTGTAAT AATGATAATG ATAATGATGC AGATGCTGAT CTTTGTAGTC TGACTGATAC CAGTATCCTT ATCATTGAAG ACGATAAAAT GAGCCAGTTG ATTCTGTCGC GTTTTCTCAG CGGATTGGGA AGCCGTATTA TCGTAGCTGG TGATGGCATG GAAGGACTCC TGCTGGCAAA AGCTTCGCGT CCTGATATCA TCATACTGGA TTCTCACATT CCTGGTCTCA GCGGTAAGGA CACGCTCGCG CAGATCCGTG CGGATGAAAT GTTACAGCAT ATCCCCGTGA TCATTGCCAG TGGCGATGCA TTTAAGGAAA ACCGCGAGGA ACTGCTGCTG GCGGGCGCAG ATGATTACCT GGTAAAACCA ATCGAGTTTA AAGCCTTGCA GGCTACGCTC TCCAAATACC TGAGAGCAAA TGCCCACCCC TGA
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Protein sequence | MSLFQHISTT GYDRVTDEDQ RRSLKIVNTL ALVTALMAGI FGLGCYVMTW DLQLSAPALI ESLLLAAVIV TNRFGKFSSA GLALILINNL SIQYYSAIMG RVTEVHLLFI FLVGLSLLVF EKDRRMRALS IGLTILAFLV GEINMYNGFI TPIVTAEKRS PVQFVIRWVT IPSILILDLT VIYYYVRNME RQRKKEMRQV QEMLQTVKEH NRELEILTAQ LAKATDAKTV FVRETSHEIR TPLNAIFGIS QLLQLKVEQD RSLAPIRQLA DHLYAASYNT REIINNVLEF SRIEAGKIDT PQLETLNVRE WLEGIVNMHQ YVASVKTVRI RASVADDLPQ LISGDKILLS KTLNNLLSNA IKFTAQESTI TLDVFRDDNK WCLQVTDQGE GIRADRLSTI FNAFVTERNI FLEGTGLGLH ITRHLATLMG GDIKVYSVMG KGTTFTVNLP LQVPAETACN NDNDNDADAD LCSLTDTSIL IIEDDKMSQL ILSRFLSGLG SRIIVAGDGM EGLLLAKASR PDIIILDSHI PGLSGKDTLA QIRADEMLQH IPVIIASGDA FKENREELLL AGADDYLVKP IEFKALQATL SKYLRANAHP
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