| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4086 |
|---|
| Symbol | |
|---|
| ID | 8360259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5081709 |
|---|
| End bp | 5084171 |
|---|
| Gene Length | 2463 bp |
|---|
| Protein Length | 820 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644966258 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003123747 |
|---|
| Protein GI | 256423094 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0127812 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAC TTTGCTTGTA TCTTTTAAGC TGCTGCCTGG GCCCATCTGC CATCGCACAG
ATCTCTGGCA GCTTTGTAAA TACCGGTGGA CAGCCCATTC CATTTGCCAA CGTACTACTG
CTCAACGGAA CCGACACAAC CCTTGTAAAA GCCGCACTGA CGGACGAAAA AGGTCTGTAC
AGCATCGCCT CCCCTCCTGC AGGAAAATAC CTGCTTCGCT TTACCGGTAT GGGTTTTCAA
ATATGGCACT CTCCCCTGTT TGATATCTCG GCTACCAGGA AAAGCCAGTC ATTCGGACAA
ATCACCATCC ATGAATTATC GCACCAACTG GGCGAGGTGG TCATACAGGC AGAAAAACCG
CTTTTTCAGC CGCAACTGGA AGGGATGGTC GTCAATGTAC AAAGCAGTCT GCTGACAAAA
GGCAGTTCCG CCTTATCTAT CCTGGAAAGA TCCCCCGGTG TCATGATTGA CTATCGCAAT
AATAGTATCG CACTCAATGG TAAAAATGGT GTCATGGTCA TGCTCAACGG AAAATTGATC
CGTATTCCCA TGGAACAACT CGTGCATCTC CTGAATGGCA TGAGTGCCGA TGATATCGAG
AAAATTGAAC TCCTGACATC CCCTTCCTCC AAATACGACG CAGAAGGGAG CGCAGGTCTT
ATCAATATCG TACTGAAAAA AGACAAACAA CAGGGTACCA ATGGCACGCT GTCCCTGACG
GGTGGATATG GCTACGGAGA AAAGGCAACT GCAGGCATTC ATTTGTCACA TAACACAGGA
AAGCTCAGCT CTTATGGTTC CTATACCTAT TCGCGGAACC GGACCTACAG CGATATCTAC
ATTCTCAGTT ACCAGGATAT GCCCGTCTTC GGTGGCAGAA TGGAAGTACT CGGCTACGAT
ACTACGCGCC ATCTGCAACA CAACCATGAT GCAAGCCTGG GCATAGACCT GAAAGCGAAT
GCAAAAACAA GCCTCGGCGC CAGCGTATCT TATAATGGCA GCAGGGCAGC TGTAACGGAC
TATAATTACG GCCGCTATCT GTTATATCCC GATTCCGTAC TGACTTATAA TGGGCAGATC
AACAGGGAAA CACAATGGCG TAACCTGGTA TCCTCCGTGT ATGTTGAACG CACAATGAAG
CATGACGCCC GGCTGAATTT CACCGCCGAT TATCTTTATT TTAAGAATGA TAATCCCTCG
CAGGTACAAA GCAGTTTCAT TACCAGTCAT GGTAAACAGG TCGATAGCAA TGATAGCCTG
TTTGCACCCA GTCAGCGGGG AATGGCGAAT ACCGTTATCC AGGTAGGCGT CCTGAAAGCA
GATTACAGCA GACAATTAAA CAGGAAGCTC AAACTGGAAG CAGGTCTGAA AGGAACCTAT
ACTGTCAGTA ACAGTACCTC CCGTATTGAA AGTCTGATAG ATGGAAAATG GATCGGCAGG
ACAGAAACCA TCAACGATAT GCGGATGCGG GAAAGTATCG GGGCGGCCTA TATTTCTGCG
AATCTGCAGC TGGCTCCATC ACTCAGCCTT ACCGCAGGCA CCCGCTATGA GTATACAAGA
ACGAAAATGA CCAATGAACG CACAGGAGAA AGGACGGTTG ATCGTACATT ATCTGCCCTG
TTCCCAAATC TTGCCTTTTC AAAGAAACTG AATGATCATA CAGAACTGCA ACTATCGTAT
ACTAAAAGGA TCAGCAGACC TTCTTATAAT GACCTCGCCG CTTTTGTGGG GTATAGCGAT
CCTACAGCGG TGTATACCGG TAACCAGTTC CTGCAGCCTT CCATTACCCA CAACATCAAA
TTGGGTTACA ACTATAAATC CTATAGTTTC TCCCTGTTAT TCAGCCGTGA TGATAACCCA
ATAGCTCGTT ATCAGCTTAC TCAAAGTCCT GCGGCCAATC TGTTATATGT TTCTCCGCAA
AATCTGGCTT ATCAGCATAA CATCACCCTA CAGGCCACCC TGCCGTGGAA GGTAAACGAC
TGGTGGGATA TGAGCTACAA TCTTATAGGA GGATACCGCC AGTTCAGGGC AGATTACCCC
TTGGTACCCG TTATAAAAAG CTACTTTGGA TACTCCGGTA ATTTTACCGA ATCATTCAGA
TTACCCCAAA ACTTCGGCCT GGAACTTACA GGCTGGTATA ACGGGAATTC CTATAACGGT
ACAATTAAGG TAGGCCCTAT GGGCACACTC AGCGCAGGTA TCAAAAAGGA ACTGAAGAAC
AATGGCGGAA CCCTGCAATT ATCAGTGGCA GATCTGCTGA AAACCATGAC GATCAATGTG
TATTATGGCA CCTTGACGGA CGAGGCTTTT TACATTAAAA ATCATGTGAA GATCAATACA
GAATCCAGCA GGTCGCCTGT TTTCAAATTG TCTTATTCCC GGTCATTCGG TATGGGGTCC
GTTCGACAAA CCAGACAGCA GGAAGGAGCA AAAGATGAAA GAGACAGGAT CAGGAAGGAT
TAA
|
|---|
| Protein sequence | MKRLCLYLLS CCLGPSAIAQ ISGSFVNTGG QPIPFANVLL LNGTDTTLVK AALTDEKGLY
SIASPPAGKY LLRFTGMGFQ IWHSPLFDIS ATRKSQSFGQ ITIHELSHQL GEVVIQAEKP
LFQPQLEGMV VNVQSSLLTK GSSALSILER SPGVMIDYRN NSIALNGKNG VMVMLNGKLI
RIPMEQLVHL LNGMSADDIE KIELLTSPSS KYDAEGSAGL INIVLKKDKQ QGTNGTLSLT
GGYGYGEKAT AGIHLSHNTG KLSSYGSYTY SRNRTYSDIY ILSYQDMPVF GGRMEVLGYD
TTRHLQHNHD ASLGIDLKAN AKTSLGASVS YNGSRAAVTD YNYGRYLLYP DSVLTYNGQI
NRETQWRNLV SSVYVERTMK HDARLNFTAD YLYFKNDNPS QVQSSFITSH GKQVDSNDSL
FAPSQRGMAN TVIQVGVLKA DYSRQLNRKL KLEAGLKGTY TVSNSTSRIE SLIDGKWIGR
TETINDMRMR ESIGAAYISA NLQLAPSLSL TAGTRYEYTR TKMTNERTGE RTVDRTLSAL
FPNLAFSKKL NDHTELQLSY TKRISRPSYN DLAAFVGYSD PTAVYTGNQF LQPSITHNIK
LGYNYKSYSF SLLFSRDDNP IARYQLTQSP AANLLYVSPQ NLAYQHNITL QATLPWKVND
WWDMSYNLIG GYRQFRADYP LVPVIKSYFG YSGNFTESFR LPQNFGLELT GWYNGNSYNG
TIKVGPMGTL SAGIKKELKN NGGTLQLSVA DLLKTMTINV YYGTLTDEAF YIKNHVKINT
ESSRSPVFKL SYSRSFGMGS VRQTRQQEGA KDERDRIRKD
|
|---|
| |