Gene Cpin_4064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4064 
Symbol 
ID8360237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand- 
Start bp5054538 
End bp5055212 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content44% 
IMG OID644966236 
ProductMgtC/SapB transporter 
Protein accessionYP_003123725 
Protein GI256423072 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000000443818 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0844762 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATGG AACACACTAT TTTTGAGAAT ATTGAACACC ACCAGTTCAT CAAGGTAATT 
GTCGCGATCG TCATTGGCGG TCTGCTGGGT CTGGAAAGGG AATACCGTCA TAAGGCGGCT 
GGTATGCGTA CATTGACGCT GATCTGTCTA GGTAGTACCC TTTTTACCAT ACTTTCAGTG 
GAAATGGGTT ATCCCAATAG CCCTGATCGT GTTGCTTCCA ATATATTGAC CGGCGTTGGC 
TTTATAGGCG CCGGCGTGAT ATTCAAAGGC GATTTCACCA TAGATGGTAT CACGACAGCC 
GCTACCATCT GGATCGCCTC CGCCCTGGGT ATTGCTATTG GAATGAGTCA TTATGTATTA 
GCCATCTTTT CCCTGGCAAT AGTCCTGTTG CTGTTATTAG GATTGAAAGC ACTCGAAGGG 
AAAATTGGTA AATGGAGAGA AAAACGCATC TACACGATCA GCTATCCGGC CGATCAACAC 
AAAGAGCACG AAATAATTAC ACTGTTCCAG CAACATAAAT TAAATTATAA GTTGCTGTTA 
CAAACGAAAA AGGATACACT GATAGAGCAT AAATACGAAA TAAGCGGCAA GCCGCACGCC 
ATGTCTGCTA TCACCGAATT CCTGCTTTCT GATAAAAATA TTCATCATTT TGCCGTTCAG 
GCGAACCCAC TTTAG
 
Protein sequence
MNMEHTIFEN IEHHQFIKVI VAIVIGGLLG LEREYRHKAA GMRTLTLICL GSTLFTILSV 
EMGYPNSPDR VASNILTGVG FIGAGVIFKG DFTIDGITTA ATIWIASALG IAIGMSHYVL 
AIFSLAIVLL LLLGLKALEG KIGKWREKRI YTISYPADQH KEHEIITLFQ QHKLNYKLLL 
QTKKDTLIEH KYEISGKPHA MSAITEFLLS DKNIHHFAVQ ANPL