Gene Cpin_4036 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4036 
Symbol 
ID8360209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5021442 
End bp5021798 
Gene Length357 bp 
Protein Length118 aa 
Translation table11 
GC content50% 
IMG OID644966209 
Productprotein of unknown function UPF0102 
Protein accessionYP_003123698 
Protein GI256423045 
COG category[L] Replication, recombination and repair 
COG ID[COG0792] Predicted endonuclease distantly related to archaeal Holliday junction resolvase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.261027 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0798574 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATCCC ATATAGCTTT GGGCAAAAAA GGGGAGTTGA TTGCATGTGG ACATCTTCGT 
TTGCATCATT ACGAGATCAT AGCGGTTAAT TGGCGGCATC GGCGGCGGGA GATAGATATT
ATCGCTTCGC GGGATGGTTG TCTGGTGTTT TTCGAGGTCA AGACGCTGGC AAGTGATCTT
TACGGCTGGC CGGAGAAGCA TGTGACGGCG GCGAAGCGGC GGAATATACA GGCTGTGGCT
TCGGCGTATA TGGACCGGAT GAAACAGCTG CCGAAGGTCA TCAGGTTTGA TGTGATTGCG
ATTACTTTTC AGCCGGATGG TACTTATGAG CTGGTGCATT TTGAGGATGC GTTTTAG
 
Protein sequence
MASHIALGKK GELIACGHLR LHHYEIIAVN WRHRRREIDI IASRDGCLVF FEVKTLASDL 
YGWPEKHVTA AKRRNIQAVA SAYMDRMKQL PKVIRFDVIA ITFQPDGTYE LVHFEDAF