Gene Cpin_4014 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4014 
Symbol 
ID8360187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4995219 
End bp4996307 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content51% 
IMG OID644966188 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_003123677 
Protein GI256423024 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0181773 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.127593 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTATAAAT ATGTCTTCAT TATAACATTG TCGGGCGTGC TGTTTACCGC CTGTCATCAC 
GGAACACCGA AAAAGAAAAC CAGTGCTGCG AAAGACAGCA AAGGGAAAAG GTATGAACTG
GTTGCTGTGG TAAAGGAACC TTTATCCTCC AGTATACAAT TGCCTGCTGT GCTGGAAGCT
TATCAGAAAG TGAGTATCTA TCCGCGGGTA AACGGATTTG TTAAGACAGT GACGGTCGAC
CGTGGTAGTG CGGTGCATAA AGGACAGGTG CTTATTACAC TGGAAGCGCC TGAGATCATC
GAACAGTATT TCGCTGCACA GTCGAAATAC CTGCAGGCTA AAGCGGTATT TGCAGCCTCA
AAAGACAACT TTCAGCGTAC CCTGGCGGTG AGTGAGACGC CGGGTACCAT TTCCGCGCAT
GACGTGGAAG TAGCGAGTGC GCGTATGGAG GCCGACAGTG CTATTATGAA CAGCGAACTG
GCCAATTTCC GGGCATTGGA AGCGACCCGT AGTTATCTGA CTGTGACAGC GCCGTTTGAT
GGGGTTATTA CAGAAAGAAA CGTCCATCCG GGGGCACTGG TAGGCCCGGG TACCCGTGTG
GAGGGTGGTC CGATGCTGAT GCTGGAACAG GAAGACCGGC TGCGTCTGGT GGTACAGGTA
CCCGAGGTCT ATAGCGCACA GTTATCTGCC AGCAGACAGG TGAGTTTTAA GGTGAATGCT
TTGCCGGGTA AGTCGTTTGC CGGTAATATC AGTCGCCAGG CGGGCTCATT AAACGACCGC
TACCGTTCAG AGGCGGTAGA GGTGGATGTT GTGAATAGTC AGCATCTGCT GAAGCCAGGT
ATGTATGCGG AGATCTCCAT TCCTGTGACG GGTTCGGTAC AGGCGATGGT GGTGCCGGCC
AGTGCGGTTG TCACTTCTAC GGAGAAGAAA TATGTAGTGG CTGTGAGAGA AGGGCAGACC
CGTTGGATAG ATGTGCAGGA GGGGAATCAC CACAGCGATT CCACGGAGGT ATTCGGGAGT
TTATTGCCGG GAGAAAAGGT GATTCTTCAT GCCAACGACG AGATAAAAGA AGGAATTAAA
ATCAATTAA
 
Protein sequence
MYKYVFIITL SGVLFTACHH GTPKKKTSAA KDSKGKRYEL VAVVKEPLSS SIQLPAVLEA 
YQKVSIYPRV NGFVKTVTVD RGSAVHKGQV LITLEAPEII EQYFAAQSKY LQAKAVFAAS
KDNFQRTLAV SETPGTISAH DVEVASARME ADSAIMNSEL ANFRALEATR SYLTVTAPFD
GVITERNVHP GALVGPGTRV EGGPMLMLEQ EDRLRLVVQV PEVYSAQLSA SRQVSFKVNA
LPGKSFAGNI SRQAGSLNDR YRSEAVEVDV VNSQHLLKPG MYAEISIPVT GSVQAMVVPA
SAVVTSTEKK YVVAVREGQT RWIDVQEGNH HSDSTEVFGS LLPGEKVILH ANDEIKEGIK
IN