Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4014 |
Symbol | |
ID | 8360187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4995219 |
End bp | 4996307 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644966188 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_003123677 |
Protein GI | 256423024 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0181773 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.127593 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATAAAT ATGTCTTCAT TATAACATTG TCGGGCGTGC TGTTTACCGC CTGTCATCAC GGAACACCGA AAAAGAAAAC CAGTGCTGCG AAAGACAGCA AAGGGAAAAG GTATGAACTG GTTGCTGTGG TAAAGGAACC TTTATCCTCC AGTATACAAT TGCCTGCTGT GCTGGAAGCT TATCAGAAAG TGAGTATCTA TCCGCGGGTA AACGGATTTG TTAAGACAGT GACGGTCGAC CGTGGTAGTG CGGTGCATAA AGGACAGGTG CTTATTACAC TGGAAGCGCC TGAGATCATC GAACAGTATT TCGCTGCACA GTCGAAATAC CTGCAGGCTA AAGCGGTATT TGCAGCCTCA AAAGACAACT TTCAGCGTAC CCTGGCGGTG AGTGAGACGC CGGGTACCAT TTCCGCGCAT GACGTGGAAG TAGCGAGTGC GCGTATGGAG GCCGACAGTG CTATTATGAA CAGCGAACTG GCCAATTTCC GGGCATTGGA AGCGACCCGT AGTTATCTGA CTGTGACAGC GCCGTTTGAT GGGGTTATTA CAGAAAGAAA CGTCCATCCG GGGGCACTGG TAGGCCCGGG TACCCGTGTG GAGGGTGGTC CGATGCTGAT GCTGGAACAG GAAGACCGGC TGCGTCTGGT GGTACAGGTA CCCGAGGTCT ATAGCGCACA GTTATCTGCC AGCAGACAGG TGAGTTTTAA GGTGAATGCT TTGCCGGGTA AGTCGTTTGC CGGTAATATC AGTCGCCAGG CGGGCTCATT AAACGACCGC TACCGTTCAG AGGCGGTAGA GGTGGATGTT GTGAATAGTC AGCATCTGCT GAAGCCAGGT ATGTATGCGG AGATCTCCAT TCCTGTGACG GGTTCGGTAC AGGCGATGGT GGTGCCGGCC AGTGCGGTTG TCACTTCTAC GGAGAAGAAA TATGTAGTGG CTGTGAGAGA AGGGCAGACC CGTTGGATAG ATGTGCAGGA GGGGAATCAC CACAGCGATT CCACGGAGGT ATTCGGGAGT TTATTGCCGG GAGAAAAGGT GATTCTTCAT GCCAACGACG AGATAAAAGA AGGAATTAAA ATCAATTAA
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Protein sequence | MYKYVFIITL SGVLFTACHH GTPKKKTSAA KDSKGKRYEL VAVVKEPLSS SIQLPAVLEA YQKVSIYPRV NGFVKTVTVD RGSAVHKGQV LITLEAPEII EQYFAAQSKY LQAKAVFAAS KDNFQRTLAV SETPGTISAH DVEVASARME ADSAIMNSEL ANFRALEATR SYLTVTAPFD GVITERNVHP GALVGPGTRV EGGPMLMLEQ EDRLRLVVQV PEVYSAQLSA SRQVSFKVNA LPGKSFAGNI SRQAGSLNDR YRSEAVEVDV VNSQHLLKPG MYAEISIPVT GSVQAMVVPA SAVVTSTEKK YVVAVREGQT RWIDVQEGNH HSDSTEVFGS LLPGEKVILH ANDEIKEGIK IN
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