Gene Cpin_4013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4013 
Symbol 
ID8360186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4992068 
End bp4995226 
Gene Length3159 bp 
Protein Length1052 aa 
Translation table11 
GC content49% 
IMG OID644966187 
Productacriflavin resistance protein 
Protein accessionYP_003123676 
Protein GI256423023 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00812103 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0431694 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATTAG TTACCAGTGC ACTGAAAAAG CCCTTGTCCG TAGTGGTACT GACCCTCGGC 
ATGTTTCTTT TTTCATTGCT GGCAGTCTTT AATATTCCTA TCGATATCTT CCCGAAGCTG
AATCTGCCGA CGATCTACGT CATAGAACCC TATGGCGGTA TGTCGCCGCA GCAGATGGAA
GGTTTCTTTG CGACCCGTCT CCAGGATCAG TTCCTGTATG TAAACGGGAT CAAAAATATC
AGCAGTAAGA ACATACAGGG CCTGACCATG ATCAAGCTCT CGTTTTACGA AAGTACCAAC
ATGGCGGAAG CGTCTGCGCA GGTGGCTTTA CAGGTGAACA GGGCCATGAA ATTCTTCCCT
CCGGGCGCAT TGCCGCCACA GGTGGTACGT TTTGATGCTT CTTCCTTACC GGTAGGACAA
TTGGTGTTCA GTTGCCCGAA CCGTTCACTG AAAGATATCT ATGACCTGGC GAATACCCGT
GTCAGACCCA TGTTCGGATC TGTTCCCGGA CTGTCTGCGC CACCGCCGTT CGGGGCTAAC
TCCCGTTCTG TTATTGTGAA TGTGGATCCT AACCGCCTCC GTAGTTATAA CATGAACGCG
GATGAAGTGG TAGAAGCGAT TGCGAAGAAT AACGTCATGA CGCCTTCCGG TAACATCCGT
ATCAACAATA CGATGTATGT AACGACCATC AATTCACTGG AAAAAGAAGT GCAGGATTTC
GGAGAAATTC CGATTACGAC AAATGGTAAT TCCACTGTTT TTATCAAGGA TGTAGCCAGG
GTATCTGATG CAGCTGACGT GACGGTGGAC TATGCATTGG TGAACGGCAA GCGTTCTGTA
TATATCCCCG TGGTGAAAAC GGCGGATGCC TCTACCTGGG ATGTGGTCAA ACAGCTGAAG
GCAAAACTGC CTGAGATGCA GAGTTTATTG CCGGAGGATG TACAGGTGAC TTACGAGTTT
GACCAGTCAG TATTTGTGAT TAATGCGGTG AAAAGTCTTG TGACGGAAGG TTTATTGGGC
GCACTGCTGA CCGGTCTGAT GGTGTTATTA TTTCTGAAGG ATCTTAGAAG TTGCCTGGTG
GTGGTGATCA CCATTCCTAT TGCGATCCTG GCAGCAGTAT TGGGGCTGCA ATTAGCGGGA
CAAACCATTA ACCTGATGAC CCTCAGCGGA CTGGCACTCG CCATCGGGGT ACTGGTCGAC
CAGGCCACAG TGACGATTGA GAATATCCAT CAGCACCTGG AAATGGGGAA GCCGAAACGG
CAGGCTATTT ATGAAGCGAG TGAGGAAATT GCCTTCCCGT TGTTGCTGAT CTTATTGTGT
ATCCTGGCGG TATTTGCGCC TTCGCTGATT ATGTCAGGTG TACCCAAGGC GATGTTCCTG
CCTTTGTCCT TGTCTATTGG ATTTGCGATG ATCGCATCTT ATTTCGCGGC GCAATCACTG
GTGCCTGTAC TGGCTAACTG GTGGCTGAAA GAAGGGAAAT TTACCCAGCA TCATCATCCC
CAGGAAGGCG GTTTCGAACG CTTTAAAACA CGGTTTGTAT CGCTGGTAGA GTGGCTGGGG
AAACGTTCCC GCCTGGTGAT CGGCGTGTAT ATACTCGTCG CTTTTGGTGT AGCCGGACTG
GCATTTATGA CCATTGGTAA AGACCTTATG CCCCATGTCA ATACGGGGCA GTTCCAGTTA
CGTTTAAAAC AACCGGATGG TACCCGTCTG GAAAGGACGG AGGAGAAAGT ACACCAGGTA
TTACAGCTGA TAGACAGTAC CAGCAACGGG AATGTGGCGA TCAGTTCGGG TTATGTGGGA
TTAATTCCCA GCAGCTATGG TACCAGTAAC CTGTACATTT TTAACAGTGG TACCCACGAG
GCGGTATTAC AGGTAAATCT GAATGAGGAC TACAAGGTAG ATATAGACGA GCTGAAAGAT
CAATTACGGG ACGTTATAAA GGCCCATATG CCCGAAATGA GGGCGAGTTT CGAACCAGTG
GACATGACCG AAAAAATCAT GGCGCAAGGG GCAGCAACAC CTATTGAGGT AAGGGTAGCC
GGAAAAGACA TGCGGCAGAT TGAAGGATAT GCCAACCAAC TGGTAGATAA ACTGGGTGAA
GTGGACTTCC TGAGAGACGT ACAGATCGCG CAGCCGCTGC ATTACCCGGT GATTAACATT
AATATCGACC GTTTCAAGGT GGCGCAGATG GGACTGAATA TGTACCAGGT AGCCCGTTCG
GTGACTGCCT CCACCTCTTC CAGCCGTTTT ACGGAGAAAA ATCAGTGGCT GGATGAAAAG
GTAGCTTATA CCTACCAGGT ACAGGTACAG ATACCGGAAT ATATCATGCA AACGATCAAC
GATCTGAAGG AGATCCCACT GGTGAAAGGA CAGCCGAGAC CCGTACTGGG AGATGTGGCC
ACTTTCTCCA ATAGCGAAAT GCCGGGAGAA TTTGACCGGG CAGGTACCCG ACGTTTTGTA
ACCGTGAGTG CCAATATTAA AGGCAAAGAC CTGGGCGCCG CTACAAAAGT GGTGGAAGCA
GCCATTCATG AAATGGGGGA TCCGCCAAGA GGACTAAAAG TTGAGCTCAA GGGTAGTTCC
AGTCTGCTGA CCGATACCCT TAGCAGTTTA CAGAACGGGC TTTTGCTGGC GATCGTCGTT
ATATTCCTGT TGCTGGCCGC CAACTATCAA TCCTTCAAAG TAAGTTTTGT GGTATTGGTC
ACCGTTCCTG CGGTAATTGC CGGCGCCTTG CTGATGTTAC TGGCTACAGG GGCTACGCTC
AATCTGCAAT CTTACATGGG GATGATCATG TCAACGGGCG TATCTGTGGC AAATGCGATC
CTTATTGTGA CCAACGCAGA GAAGCTCCGC TTAGAATACA AAGACGCCTA TAAAGCGGCT
ATTGCGAGTG CCGGCTTGCG TTTGAGACCT ATTCTGATGA CCAGTCTGGC GATGATAGCG
GGCATGATTC CGATGGCGAC TGGTATGGGT GAATCAGGAG ATCAGACGGC TCCGCTGGGC
CGTGCTGTGA TCGGCGGACT GATAGCTTCT ACTGTAGCCG CCCTGCTGAT ATTACCGCTG
GTATATGCTG CCGTGCAGCG TAAAGCATCT TATGAAGATC CTTCTCTGAT GCCTGAAAAC
AAGATCGATG AACCTAAAAC TGCTAATATC CATGTATAA
 
Protein sequence
MSLVTSALKK PLSVVVLTLG MFLFSLLAVF NIPIDIFPKL NLPTIYVIEP YGGMSPQQME 
GFFATRLQDQ FLYVNGIKNI SSKNIQGLTM IKLSFYESTN MAEASAQVAL QVNRAMKFFP
PGALPPQVVR FDASSLPVGQ LVFSCPNRSL KDIYDLANTR VRPMFGSVPG LSAPPPFGAN
SRSVIVNVDP NRLRSYNMNA DEVVEAIAKN NVMTPSGNIR INNTMYVTTI NSLEKEVQDF
GEIPITTNGN STVFIKDVAR VSDAADVTVD YALVNGKRSV YIPVVKTADA STWDVVKQLK
AKLPEMQSLL PEDVQVTYEF DQSVFVINAV KSLVTEGLLG ALLTGLMVLL FLKDLRSCLV
VVITIPIAIL AAVLGLQLAG QTINLMTLSG LALAIGVLVD QATVTIENIH QHLEMGKPKR
QAIYEASEEI AFPLLLILLC ILAVFAPSLI MSGVPKAMFL PLSLSIGFAM IASYFAAQSL
VPVLANWWLK EGKFTQHHHP QEGGFERFKT RFVSLVEWLG KRSRLVIGVY ILVAFGVAGL
AFMTIGKDLM PHVNTGQFQL RLKQPDGTRL ERTEEKVHQV LQLIDSTSNG NVAISSGYVG
LIPSSYGTSN LYIFNSGTHE AVLQVNLNED YKVDIDELKD QLRDVIKAHM PEMRASFEPV
DMTEKIMAQG AATPIEVRVA GKDMRQIEGY ANQLVDKLGE VDFLRDVQIA QPLHYPVINI
NIDRFKVAQM GLNMYQVARS VTASTSSSRF TEKNQWLDEK VAYTYQVQVQ IPEYIMQTIN
DLKEIPLVKG QPRPVLGDVA TFSNSEMPGE FDRAGTRRFV TVSANIKGKD LGAATKVVEA
AIHEMGDPPR GLKVELKGSS SLLTDTLSSL QNGLLLAIVV IFLLLAANYQ SFKVSFVVLV
TVPAVIAGAL LMLLATGATL NLQSYMGMIM STGVSVANAI LIVTNAEKLR LEYKDAYKAA
IASAGLRLRP ILMTSLAMIA GMIPMATGMG ESGDQTAPLG RAVIGGLIAS TVAALLILPL
VYAAVQRKAS YEDPSLMPEN KIDEPKTANI HV