Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4013 |
Symbol | |
ID | 8360186 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4992068 |
End bp | 4995226 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644966187 |
Product | acriflavin resistance protein |
Protein accession | YP_003123676 |
Protein GI | 256423023 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00812103 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0431694 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATTAG TTACCAGTGC ACTGAAAAAG CCCTTGTCCG TAGTGGTACT GACCCTCGGC ATGTTTCTTT TTTCATTGCT GGCAGTCTTT AATATTCCTA TCGATATCTT CCCGAAGCTG AATCTGCCGA CGATCTACGT CATAGAACCC TATGGCGGTA TGTCGCCGCA GCAGATGGAA GGTTTCTTTG CGACCCGTCT CCAGGATCAG TTCCTGTATG TAAACGGGAT CAAAAATATC AGCAGTAAGA ACATACAGGG CCTGACCATG ATCAAGCTCT CGTTTTACGA AAGTACCAAC ATGGCGGAAG CGTCTGCGCA GGTGGCTTTA CAGGTGAACA GGGCCATGAA ATTCTTCCCT CCGGGCGCAT TGCCGCCACA GGTGGTACGT TTTGATGCTT CTTCCTTACC GGTAGGACAA TTGGTGTTCA GTTGCCCGAA CCGTTCACTG AAAGATATCT ATGACCTGGC GAATACCCGT GTCAGACCCA TGTTCGGATC TGTTCCCGGA CTGTCTGCGC CACCGCCGTT CGGGGCTAAC TCCCGTTCTG TTATTGTGAA TGTGGATCCT AACCGCCTCC GTAGTTATAA CATGAACGCG GATGAAGTGG TAGAAGCGAT TGCGAAGAAT AACGTCATGA CGCCTTCCGG TAACATCCGT ATCAACAATA CGATGTATGT AACGACCATC AATTCACTGG AAAAAGAAGT GCAGGATTTC GGAGAAATTC CGATTACGAC AAATGGTAAT TCCACTGTTT TTATCAAGGA TGTAGCCAGG GTATCTGATG CAGCTGACGT GACGGTGGAC TATGCATTGG TGAACGGCAA GCGTTCTGTA TATATCCCCG TGGTGAAAAC GGCGGATGCC TCTACCTGGG ATGTGGTCAA ACAGCTGAAG GCAAAACTGC CTGAGATGCA GAGTTTATTG CCGGAGGATG TACAGGTGAC TTACGAGTTT GACCAGTCAG TATTTGTGAT TAATGCGGTG AAAAGTCTTG TGACGGAAGG TTTATTGGGC GCACTGCTGA CCGGTCTGAT GGTGTTATTA TTTCTGAAGG ATCTTAGAAG TTGCCTGGTG GTGGTGATCA CCATTCCTAT TGCGATCCTG GCAGCAGTAT TGGGGCTGCA ATTAGCGGGA CAAACCATTA ACCTGATGAC CCTCAGCGGA CTGGCACTCG CCATCGGGGT ACTGGTCGAC CAGGCCACAG TGACGATTGA GAATATCCAT CAGCACCTGG AAATGGGGAA GCCGAAACGG CAGGCTATTT ATGAAGCGAG TGAGGAAATT GCCTTCCCGT TGTTGCTGAT CTTATTGTGT ATCCTGGCGG TATTTGCGCC TTCGCTGATT ATGTCAGGTG TACCCAAGGC GATGTTCCTG CCTTTGTCCT TGTCTATTGG ATTTGCGATG ATCGCATCTT ATTTCGCGGC GCAATCACTG GTGCCTGTAC TGGCTAACTG GTGGCTGAAA GAAGGGAAAT TTACCCAGCA TCATCATCCC CAGGAAGGCG GTTTCGAACG CTTTAAAACA CGGTTTGTAT CGCTGGTAGA GTGGCTGGGG AAACGTTCCC GCCTGGTGAT CGGCGTGTAT ATACTCGTCG CTTTTGGTGT AGCCGGACTG GCATTTATGA CCATTGGTAA AGACCTTATG CCCCATGTCA ATACGGGGCA GTTCCAGTTA CGTTTAAAAC AACCGGATGG TACCCGTCTG GAAAGGACGG AGGAGAAAGT ACACCAGGTA TTACAGCTGA TAGACAGTAC CAGCAACGGG AATGTGGCGA TCAGTTCGGG TTATGTGGGA TTAATTCCCA GCAGCTATGG TACCAGTAAC CTGTACATTT TTAACAGTGG TACCCACGAG GCGGTATTAC AGGTAAATCT GAATGAGGAC TACAAGGTAG ATATAGACGA GCTGAAAGAT CAATTACGGG ACGTTATAAA GGCCCATATG CCCGAAATGA GGGCGAGTTT CGAACCAGTG GACATGACCG AAAAAATCAT GGCGCAAGGG GCAGCAACAC CTATTGAGGT AAGGGTAGCC GGAAAAGACA TGCGGCAGAT TGAAGGATAT GCCAACCAAC TGGTAGATAA ACTGGGTGAA GTGGACTTCC TGAGAGACGT ACAGATCGCG CAGCCGCTGC ATTACCCGGT GATTAACATT AATATCGACC GTTTCAAGGT GGCGCAGATG GGACTGAATA TGTACCAGGT AGCCCGTTCG GTGACTGCCT CCACCTCTTC CAGCCGTTTT ACGGAGAAAA ATCAGTGGCT GGATGAAAAG GTAGCTTATA CCTACCAGGT ACAGGTACAG ATACCGGAAT ATATCATGCA AACGATCAAC GATCTGAAGG AGATCCCACT GGTGAAAGGA CAGCCGAGAC CCGTACTGGG AGATGTGGCC ACTTTCTCCA ATAGCGAAAT GCCGGGAGAA TTTGACCGGG CAGGTACCCG ACGTTTTGTA ACCGTGAGTG CCAATATTAA AGGCAAAGAC CTGGGCGCCG CTACAAAAGT GGTGGAAGCA GCCATTCATG AAATGGGGGA TCCGCCAAGA GGACTAAAAG TTGAGCTCAA GGGTAGTTCC AGTCTGCTGA CCGATACCCT TAGCAGTTTA CAGAACGGGC TTTTGCTGGC GATCGTCGTT ATATTCCTGT TGCTGGCCGC CAACTATCAA TCCTTCAAAG TAAGTTTTGT GGTATTGGTC ACCGTTCCTG CGGTAATTGC CGGCGCCTTG CTGATGTTAC TGGCTACAGG GGCTACGCTC AATCTGCAAT CTTACATGGG GATGATCATG TCAACGGGCG TATCTGTGGC AAATGCGATC CTTATTGTGA CCAACGCAGA GAAGCTCCGC TTAGAATACA AAGACGCCTA TAAAGCGGCT ATTGCGAGTG CCGGCTTGCG TTTGAGACCT ATTCTGATGA CCAGTCTGGC GATGATAGCG GGCATGATTC CGATGGCGAC TGGTATGGGT GAATCAGGAG ATCAGACGGC TCCGCTGGGC CGTGCTGTGA TCGGCGGACT GATAGCTTCT ACTGTAGCCG CCCTGCTGAT ATTACCGCTG GTATATGCTG CCGTGCAGCG TAAAGCATCT TATGAAGATC CTTCTCTGAT GCCTGAAAAC AAGATCGATG AACCTAAAAC TGCTAATATC CATGTATAA
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Protein sequence | MSLVTSALKK PLSVVVLTLG MFLFSLLAVF NIPIDIFPKL NLPTIYVIEP YGGMSPQQME GFFATRLQDQ FLYVNGIKNI SSKNIQGLTM IKLSFYESTN MAEASAQVAL QVNRAMKFFP PGALPPQVVR FDASSLPVGQ LVFSCPNRSL KDIYDLANTR VRPMFGSVPG LSAPPPFGAN SRSVIVNVDP NRLRSYNMNA DEVVEAIAKN NVMTPSGNIR INNTMYVTTI NSLEKEVQDF GEIPITTNGN STVFIKDVAR VSDAADVTVD YALVNGKRSV YIPVVKTADA STWDVVKQLK AKLPEMQSLL PEDVQVTYEF DQSVFVINAV KSLVTEGLLG ALLTGLMVLL FLKDLRSCLV VVITIPIAIL AAVLGLQLAG QTINLMTLSG LALAIGVLVD QATVTIENIH QHLEMGKPKR QAIYEASEEI AFPLLLILLC ILAVFAPSLI MSGVPKAMFL PLSLSIGFAM IASYFAAQSL VPVLANWWLK EGKFTQHHHP QEGGFERFKT RFVSLVEWLG KRSRLVIGVY ILVAFGVAGL AFMTIGKDLM PHVNTGQFQL RLKQPDGTRL ERTEEKVHQV LQLIDSTSNG NVAISSGYVG LIPSSYGTSN LYIFNSGTHE AVLQVNLNED YKVDIDELKD QLRDVIKAHM PEMRASFEPV DMTEKIMAQG AATPIEVRVA GKDMRQIEGY ANQLVDKLGE VDFLRDVQIA QPLHYPVINI NIDRFKVAQM GLNMYQVARS VTASTSSSRF TEKNQWLDEK VAYTYQVQVQ IPEYIMQTIN DLKEIPLVKG QPRPVLGDVA TFSNSEMPGE FDRAGTRRFV TVSANIKGKD LGAATKVVEA AIHEMGDPPR GLKVELKGSS SLLTDTLSSL QNGLLLAIVV IFLLLAANYQ SFKVSFVVLV TVPAVIAGAL LMLLATGATL NLQSYMGMIM STGVSVANAI LIVTNAEKLR LEYKDAYKAA IASAGLRLRP ILMTSLAMIA GMIPMATGMG ESGDQTAPLG RAVIGGLIAS TVAALLILPL VYAAVQRKAS YEDPSLMPEN KIDEPKTANI HV
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