Gene Cpin_4012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4012 
Symbol 
ID8360185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4990652 
End bp4992049 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content49% 
IMG OID644966186 
Productouter membrane efflux protein 
Protein accessionYP_003123675 
Protein GI256423022 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0140035 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00198888 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTGGGTGA TATCGCTATG TCTTCTGACT GGCCTGTCAT CGCGTGTCCG TGCACAGACG 
GAAGGGGAAC ATCTGCCTTT AGAAAAGGCG ATTGCGCTGA CCCTTCAACA TTATCCGTCT
TTAAAAGCGA AACAGACATT ATCAAAGGCA GGCGTCGCCC ATACGACAGA CGTCAGCCAT
AACTGGTGGC CTTCCGTAAA ACTCGTGGAA GAAGCAACCG TTGGCACTGA TAATGGTATT
TACGGATCTT ATTTTCCTTT GGGGACAATC CCTTCTACAT CAGGCGGTAT CCGTGAAGGA
AACCGCAGTG ATGTGATGAG CGGTAATATT GCACTTGCAC AGGTGCAATG GGAAGTTTAC
AATTTTGGCG CTTACCGCAC CCGGCGGGAG GAAGCTATAC AACAACAGAA AGTGGCCGGT
CTGGATGCTG ATATTACAGC GAATGACCTG ACGGTTGCTG TTGTACGAGA TTACCTGGGT
ATGCTTCAAT ACCGGGCACT CATGAAAATT CAGGAAGACA ATATAGAACG TACCCGTTCT
GTACAGAGAG CCGTTACGGC CATTGTGCTG CATGGTCTGA AACCAGGAGT AGACAGTTCT
GTAGCCGCTG CTGAATTATC CAAAGCCAGA CTAAATTACA TCGATATACA AAACAGCTAT
AACAGTGTGC GTATGCATAT GAGTATGCTC ACAGGGCTGG ATACCAGTGC CATACGGCCG
GATACCCTGT ATAATTCCGG TTTGCTGTCA TTGCTGGCTG GTACCGCTGA TACTTCTTCG
GTAGCCGCCT CACATCCTGT ATTACAGTAT TACAATGGTT TGCTGTTGCA GCAGGAGAAA
CATAGTGAAG TGATCCGTAA GGCAGCTTTA CCAAAGATCT CTGTGCTGGC CTCCGGATGG
ATGCGTGGTT CCAGCGGAGA ATTCAACGAT ATCTATGGTA AGAACCTGCT GGAAGGATTT
GGTTTCAAGC GATATAACTA TCTCACAGGA CTGGCACTGA CTTACAATCT GGCGGATATC
GGTCATACAA AAGATAAAAT GCGGGAACAA ACCTTAAAAA CCCGTGCTGC CGCAGAGCAA
CTGGAAACCA CACAGCTGGT GCTGGATAAT AGTCTGCGTC AGGCGAAACT CAATATCCAT
ACTGCACTGG ATAAACTACA GGAGATGCCC GCCCAGCTGA ATGCGGCCAG GGCTGCCGCT
TTACAAAAGA TGGCACTGTA CAAGGGGGGA TTGACCAATA TTATCGAGGT GACGAATGCC
CTGTATCTCT TGAACAGGGC GGAAACAGAT CTCGTACAAA CACGTAATGC TGCCTGGCAG
GCGCTTTTTA CGCAGGCATT TGCCGCGAAT GCGATACAGG AACTGGTACA ACGACTGGAG
CAGTCCCGTA TGCAATAA
 
Protein sequence
MWVISLCLLT GLSSRVRAQT EGEHLPLEKA IALTLQHYPS LKAKQTLSKA GVAHTTDVSH 
NWWPSVKLVE EATVGTDNGI YGSYFPLGTI PSTSGGIREG NRSDVMSGNI ALAQVQWEVY
NFGAYRTRRE EAIQQQKVAG LDADITANDL TVAVVRDYLG MLQYRALMKI QEDNIERTRS
VQRAVTAIVL HGLKPGVDSS VAAAELSKAR LNYIDIQNSY NSVRMHMSML TGLDTSAIRP
DTLYNSGLLS LLAGTADTSS VAASHPVLQY YNGLLLQQEK HSEVIRKAAL PKISVLASGW
MRGSSGEFND IYGKNLLEGF GFKRYNYLTG LALTYNLADI GHTKDKMREQ TLKTRAAAEQ
LETTQLVLDN SLRQAKLNIH TALDKLQEMP AQLNAARAAA LQKMALYKGG LTNIIEVTNA
LYLLNRAETD LVQTRNAAWQ ALFTQAFAAN AIQELVQRLE QSRMQ