Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_4012 |
Symbol | |
ID | 8360185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | + |
Start bp | 4990652 |
End bp | 4992049 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644966186 |
Product | outer membrane efflux protein |
Protein accession | YP_003123675 |
Protein GI | 256423022 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0140035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.00198888 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTGGGTGA TATCGCTATG TCTTCTGACT GGCCTGTCAT CGCGTGTCCG TGCACAGACG GAAGGGGAAC ATCTGCCTTT AGAAAAGGCG ATTGCGCTGA CCCTTCAACA TTATCCGTCT TTAAAAGCGA AACAGACATT ATCAAAGGCA GGCGTCGCCC ATACGACAGA CGTCAGCCAT AACTGGTGGC CTTCCGTAAA ACTCGTGGAA GAAGCAACCG TTGGCACTGA TAATGGTATT TACGGATCTT ATTTTCCTTT GGGGACAATC CCTTCTACAT CAGGCGGTAT CCGTGAAGGA AACCGCAGTG ATGTGATGAG CGGTAATATT GCACTTGCAC AGGTGCAATG GGAAGTTTAC AATTTTGGCG CTTACCGCAC CCGGCGGGAG GAAGCTATAC AACAACAGAA AGTGGCCGGT CTGGATGCTG ATATTACAGC GAATGACCTG ACGGTTGCTG TTGTACGAGA TTACCTGGGT ATGCTTCAAT ACCGGGCACT CATGAAAATT CAGGAAGACA ATATAGAACG TACCCGTTCT GTACAGAGAG CCGTTACGGC CATTGTGCTG CATGGTCTGA AACCAGGAGT AGACAGTTCT GTAGCCGCTG CTGAATTATC CAAAGCCAGA CTAAATTACA TCGATATACA AAACAGCTAT AACAGTGTGC GTATGCATAT GAGTATGCTC ACAGGGCTGG ATACCAGTGC CATACGGCCG GATACCCTGT ATAATTCCGG TTTGCTGTCA TTGCTGGCTG GTACCGCTGA TACTTCTTCG GTAGCCGCCT CACATCCTGT ATTACAGTAT TACAATGGTT TGCTGTTGCA GCAGGAGAAA CATAGTGAAG TGATCCGTAA GGCAGCTTTA CCAAAGATCT CTGTGCTGGC CTCCGGATGG ATGCGTGGTT CCAGCGGAGA ATTCAACGAT ATCTATGGTA AGAACCTGCT GGAAGGATTT GGTTTCAAGC GATATAACTA TCTCACAGGA CTGGCACTGA CTTACAATCT GGCGGATATC GGTCATACAA AAGATAAAAT GCGGGAACAA ACCTTAAAAA CCCGTGCTGC CGCAGAGCAA CTGGAAACCA CACAGCTGGT GCTGGATAAT AGTCTGCGTC AGGCGAAACT CAATATCCAT ACTGCACTGG ATAAACTACA GGAGATGCCC GCCCAGCTGA ATGCGGCCAG GGCTGCCGCT TTACAAAAGA TGGCACTGTA CAAGGGGGGA TTGACCAATA TTATCGAGGT GACGAATGCC CTGTATCTCT TGAACAGGGC GGAAACAGAT CTCGTACAAA CACGTAATGC TGCCTGGCAG GCGCTTTTTA CGCAGGCATT TGCCGCGAAT GCGATACAGG AACTGGTACA ACGACTGGAG CAGTCCCGTA TGCAATAA
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Protein sequence | MWVISLCLLT GLSSRVRAQT EGEHLPLEKA IALTLQHYPS LKAKQTLSKA GVAHTTDVSH NWWPSVKLVE EATVGTDNGI YGSYFPLGTI PSTSGGIREG NRSDVMSGNI ALAQVQWEVY NFGAYRTRRE EAIQQQKVAG LDADITANDL TVAVVRDYLG MLQYRALMKI QEDNIERTRS VQRAVTAIVL HGLKPGVDSS VAAAELSKAR LNYIDIQNSY NSVRMHMSML TGLDTSAIRP DTLYNSGLLS LLAGTADTSS VAASHPVLQY YNGLLLQQEK HSEVIRKAAL PKISVLASGW MRGSSGEFND IYGKNLLEGF GFKRYNYLTG LALTYNLADI GHTKDKMREQ TLKTRAAAEQ LETTQLVLDN SLRQAKLNIH TALDKLQEMP AQLNAARAAA LQKMALYKGG LTNIIEVTNA LYLLNRAETD LVQTRNAAWQ ALFTQAFAAN AIQELVQRLE QSRMQ
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