Gene Cpin_3994 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3994 
Symbol 
ID8360167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4968379 
End bp4970022 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content53% 
IMG OID644966168 
Productribulokinase 
Protein accessionYP_003123657 
Protein GI256423004 
COG category[C] Energy production and conversion 
COG ID[COG1069] Ribulose kinase 
TIGRFAM ID[TIGR01234] L-ribulokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.026407 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.515054 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATT CATTTGTAAT AGGTGTCGAC TTCGGTACCG ATTCAGTGCG CTCTCTCGTA 
GTAAATACTC AGACAGGACA GGAAGCCGGC AGTGCAGTGC ATTACTACCC TCGCTGGCAG
AAAGGATTAT ACTGTGACCC GGCTACGCAA CAATACAGGC AGCACCCGCT GGATTACCTG
GAAGGGCTGG AGCATAGTAT CCGTGAAGCA TTGCAGCAAT GTCCTCCGGG TACGGCGGCC
CTGGTGAAAG GGATCGCCGT AGACACGACC GGTTCTACGC CGGGTCCGGT AGATGAAACC
GGTACGCCGC TGGCTTTGGT ACCCGGATTT GAAGAGAATC CAAATGCCAT GTTCGTCCTC
TGGAAAGATC ATACTGCCAA TAAGGAAGCA GCCCTGATTA ATGACATCGC GCATAGCAAT
GGGATGGATT ATACCCAGTA CAGTGGCGGT ATTTACAGCA GCGAGTGGTA TTGGGCCAAG
ATATTGCACG TTATTACAAC TGATGATGCC GTACGTGAAA AGGCAGCTTC CTGGGTAGAG
CATTGCGACT GGATCCCGGC TGTACTCACC GGCAATAAAA GCCTCAGCAC CCTGTTACGC
AGTCGTTGCG CAGCGGGTCA TAAAGCGATG TGGCACGCCT CCTGGGGGGG CTTACCTCCG
CGTACGTTTC TTGAAAAACT GAATCCCGCA CTCACAAAAT ACGACCAGAC ATATACCGAT
ACCGTTGAAG CGACCGTACC TGCCGGCACT ATCAGTGCGG CATGGGCGGA GAAATTGGGT
CTGCCAACAG ATGTAATCAT CGGCACCGGT GCATTTGACG CACACATGGG CGCCGTAGGC
GGTGGTATCC AGTCTTACTC CCTCTGTAAA GTCATCGGTA CCAGCACCTG CGATATCCTG
GTAGCGCCTA TGGAGGAAGC TGGGCATCTG TTTGTAAAAG GTATCTGCGG ACAGGTAGAT
GGTTCGGTAA TACCGGGTAT GCTCGGATTG GAAGCGGGTC AATCCGCTTA CGGCGATGTA
TTTGCCTGGC TGCGTAAACT GATCATGGGA CCGATGTATG CCCTCTTACC GGATGAGCAG
GACAAACTGG CCGCAGTAGA GGGCCGGTTG TTAGGCTACC TCTCGGCACA GGCGCAGCAA
TTGCCATTGA AAGAGAATGA TCCGCTGGCA CTGGACTGGT TTAATGGTCG TCGTACGCCA
GACGCTAATC ACACGCTGAA AAGCACCATT ACAGGTTTAC ACCTTGGTAT AGACGCTGTA
CAGGTGTTCA AAGCACTGGT AGAAGCCACC GCTTTCGGGG CGCAAAGCAT CGCAGCGCGT
TTCGAGAAAG AAGGTATCGC GATCAAAGAA GTGATCGCCC TGGGTGGCGT AGCCAAGAAA
TCAGGTTATG CCATGCAGGT ACTGGCAGAT GTCATGAACC GTCCTATCCG CATTGTCAAT
AGTGAGAATG CATGTGCACT GGGCGCGGCT ATGTTTGCAG CAGTAGCAGC AGGTGTATAT
CCTGATATTG ATCAGGCACA GCAGGCAATG ACTTCCGGAT TTGAAACGAC CTGGCAGCCC
CGCCAGGAGA ATGTGGCTTA TTACGCCGCC CGTTACCGCA AATTCCAGGA ACTGGGCGCT
ATCACCGAAA AACTATACGT ATGA
 
Protein sequence
MENSFVIGVD FGTDSVRSLV VNTQTGQEAG SAVHYYPRWQ KGLYCDPATQ QYRQHPLDYL 
EGLEHSIREA LQQCPPGTAA LVKGIAVDTT GSTPGPVDET GTPLALVPGF EENPNAMFVL
WKDHTANKEA ALINDIAHSN GMDYTQYSGG IYSSEWYWAK ILHVITTDDA VREKAASWVE
HCDWIPAVLT GNKSLSTLLR SRCAAGHKAM WHASWGGLPP RTFLEKLNPA LTKYDQTYTD
TVEATVPAGT ISAAWAEKLG LPTDVIIGTG AFDAHMGAVG GGIQSYSLCK VIGTSTCDIL
VAPMEEAGHL FVKGICGQVD GSVIPGMLGL EAGQSAYGDV FAWLRKLIMG PMYALLPDEQ
DKLAAVEGRL LGYLSAQAQQ LPLKENDPLA LDWFNGRRTP DANHTLKSTI TGLHLGIDAV
QVFKALVEAT AFGAQSIAAR FEKEGIAIKE VIALGGVAKK SGYAMQVLAD VMNRPIRIVN
SENACALGAA MFAAVAAGVY PDIDQAQQAM TSGFETTWQP RQENVAYYAA RYRKFQELGA
ITEKLYV