Gene Cpin_3976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3976 
Symbol 
ID8360149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4943221 
End bp4945506 
Gene Length2286 bp 
Protein Length761 aa 
Translation table11 
GC content46% 
IMG OID644966150 
Productalpha-1,2-mannosidase 
Protein accessionYP_003123639 
Protein GI256422986 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3537] Putative alpha-1,2-mannosidase 
TIGRFAM ID[TIGR01180] alpha-1,2-mannosidase, putative 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00516105 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.689396 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATTGG GACTTAAGCA TTACCCTGTG CTGGCTGCCT CACTTCTACT GGCCGGCATG 
CAGGTAAACG GACAAGACAA AAAACCAACT TTTACTTCAG GAAAGGAGTT TAAGCCATCA
GAATACGTAA ATCCATACAT CGGTACCGGT GGACATGGTC ACGTGTTCCT GGGCGCGAGC
GTACCTTTTG GTGCAGTACA GGTGGGACCT ACCAACATTG TAAAGGGTTG GGACTGGTGT
TCTGGTTATC ATTATTCTGA CAGTGTGGTG ATTGGTTTCC CGCAGATGCA CCTGAGTGGT
ACCGGTATCG GCGACCTGGG CGATGTGCTG ATTATGCCCT ATACCGGTAA GATCAGGACC
AACCACGGTT CACAGGAGAA TCCGACCAGC GGTTACGGAT CCCACTATAC ACACGCGCAT
GAAACAGCTA AACCTGGTTA TTACGCGGTG CAGCTGGAAG ACTACAATAT CAAAGTGGAA
CTGACTGCTT CTGAAAGGGT TGGTTTCCAT AAATATACAT TCCCGGCAGG CCAGGAAGGT
CACATTATCA TCGACCTGAA AGAAGGTATC GGCTGGGATG CGCCTGTAGA AACCTTCATC
CAGAAGAAGG ACGAGTATAC CCTGGTAGGT TACCGTTATT CCAAAGGATG GGCGGAAGAT
CAGCGCCTGT GGTTTGCGAT TAAGAGCAAT GTACCTGTAA AGGACTTTGT AGTATTTGAC
GGTGACAAAC AACTCTCTGG TACTGAAGGA AAAGGTAAGA CCATCAAAGG TGTTATCAAT
TTTGACAAAG CGCCTGCAGA AGCAATGCTG AAAGTAGGTA TTTCTCCTGT AAGCAGCGAG
AATGCGCTGG CTAACATCAA CAGTGAGATC CCTTCCTGGG ATTTTGCAGG TACGGTGAAA
ACAGCTACCG GCAAATGGAA CAAGGAATTG TCCAAGATCC AGCTGCAAAC AAAAGATACT
GCCAACAGAA GCATTTTCTA TACAGCCATG TATCATACAA TGATTGGTCC GGCACTGTTC
AATGACCATG ACCGTTCTTA CCGGGGTACT GATAAAAAAG CATATCCTAA TCCGGGTTTT
GACAACTACA CTGTTTTCTC CCTGTGGGAT ATCTACCGCT CATGTGCGCC ACTGTATACC
CTGACACAGC CAGAGAGAGT GAGCAGTTTT GTAAACTCTA TGCTGACGAT CTACAAACAG
CAGGGTAAAC TGCCTATCTG GCCACTGGTA GGTAGCGAAA CGAACTGTAT GGTGGGTTAT
CATGCGGTAC CGGTTATTGC TGACGCTTAC CTGAAAGGTT ACAAAGGCTT TAATATCAAT
GAAGCGTTTG ACGCCATGAA GGCTTCTGCT ACCAGAGATG ATCTGGGCAT GAAGGATATC
AAGGCAAAAG GATACATTCC TGCTGATAAA GAATACGAAT CTGTATCCAA AGCGATGGAA
TATGCGATTG ACGACTGGTG TATTGCTGCT GTAGCTAAAA AGCTGGGCCG CGCTGCTGAT
TTCGAATATT TTTCCAAACG TGCAGGTTAT TATAAAAACT ACTTCGACAG CACTATCAAG
TTTGTGCGTC CAAGAATGGA TGACGGTAGC TTCAAAACGC CGTACGATCC GTTCCATTCC
ATCCATGAGA AAGGTGACTT CACTGAAGGT AATGGCTGGC AGTACACCTG GCTGGTACCA
CAGGATGTGG AAGGTCTGAT CAGCCTGATG GGTGGTGATG ATGCTTTCAC CAAAAAACTG
GACAGTCTGT TTGTGGCAAG CGGCGACATG GGTGCAGAAG CATCTAATGA TATTTCCGGT
CTGATTGGTA TGTATGCACA TGGTAATGAG CCAAGCCATC ACGTAACTTA CATGTATGCT
TATGCTGGTA ACCAGTGGAA AACATCCGAG AAGGTAAGAC AGGTGATGAG AGACTTCTAT
ACTACCACTC CGGAAGGGCT GGCTGGTAAC GAGGACGTAG GCGCGATGTC TTCCTGGTAT
GTACTGTCTT CTCTAGGCTT CTATCCTGTA AATCCTGCAA AAGGGATTTA TGTGTTTGGT
AGTCCGCTGT TTGAAAAAGC CAGTCTGAAA GTACAAGGTG GTAAAACTTT CAACGTTGAA
ACCGTCAACA ACAGCGCTGA GAACATTTAC ATCCAGCAGA TTACGCTGAA TGGCAAGCCA
TACAAAAACA GCTATATCCG TCACGCGGAT ATCCAGAAAG GAGGTAACCT GAAGATCACC
ATGGGTAACA AGCCTAATTA TGATTTCGGT AAAGCGGTGG CTAACCGTCC CGATTCAAAA
TACTAA
 
Protein sequence
MQLGLKHYPV LAASLLLAGM QVNGQDKKPT FTSGKEFKPS EYVNPYIGTG GHGHVFLGAS 
VPFGAVQVGP TNIVKGWDWC SGYHYSDSVV IGFPQMHLSG TGIGDLGDVL IMPYTGKIRT
NHGSQENPTS GYGSHYTHAH ETAKPGYYAV QLEDYNIKVE LTASERVGFH KYTFPAGQEG
HIIIDLKEGI GWDAPVETFI QKKDEYTLVG YRYSKGWAED QRLWFAIKSN VPVKDFVVFD
GDKQLSGTEG KGKTIKGVIN FDKAPAEAML KVGISPVSSE NALANINSEI PSWDFAGTVK
TATGKWNKEL SKIQLQTKDT ANRSIFYTAM YHTMIGPALF NDHDRSYRGT DKKAYPNPGF
DNYTVFSLWD IYRSCAPLYT LTQPERVSSF VNSMLTIYKQ QGKLPIWPLV GSETNCMVGY
HAVPVIADAY LKGYKGFNIN EAFDAMKASA TRDDLGMKDI KAKGYIPADK EYESVSKAME
YAIDDWCIAA VAKKLGRAAD FEYFSKRAGY YKNYFDSTIK FVRPRMDDGS FKTPYDPFHS
IHEKGDFTEG NGWQYTWLVP QDVEGLISLM GGDDAFTKKL DSLFVASGDM GAEASNDISG
LIGMYAHGNE PSHHVTYMYA YAGNQWKTSE KVRQVMRDFY TTTPEGLAGN EDVGAMSSWY
VLSSLGFYPV NPAKGIYVFG SPLFEKASLK VQGGKTFNVE TVNNSAENIY IQQITLNGKP
YKNSYIRHAD IQKGGNLKIT MGNKPNYDFG KAVANRPDSK Y