| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3955 |
|---|
| Symbol | |
|---|
| ID | 8360128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4917078 |
|---|
| End bp | 4917884 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644966129 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003123618 |
|---|
| Protein GI | 256422965 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.450769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.344502 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGG ATCTGAAAAA CAAAACCGCT TTTATTACCG GTGCTGCACA TGGACAGGGC
CGCGCTGCCG CCCTTGCACT GGCGGAAGAA GGCGTACATA TCGCCGCTTT TGATATTGCC
CGTCAGATGG ATTATCCGGG TTATACGCTG GGTTCCACAT CTGAATTGGA TTCCCTGAAA
ACAGCCTGCG AAGCGCTGGG CGTACAATGC CTGACCTTTA CCGGTGATGT GCGGGATAAT
GCGGCTGTAA AACAAGCTGT AACAGCTGCT GCGGAGGCCT TTGGTCGCAT CGATATCCTG
TTTAACAATG CAGGGATCTG CGCTTATGGC GTAACGCATG AAATGCCGGA AGAAGAATGG
GATGCCATGA TCGATATCAA CCTGAAAGGC GCCTGGATTG CCGGCAGGCA CGTTATTCCG
GTGATGATCG CGCAGGGTGG CGGGGTGATT ATCAACAATT CCTCTATTGC GGGATTACGA
GGCATGAACC GGCTGAGTCA TTATGCGGCT TCTAAATGGG GACTGACGGG ATTAACAAAG
TCCTGGGCCA TCGAACTCGC GCCCTATAAT ATCCGGTCTG TCGCCATACA TCCTACAGGT
GTCAATACCC CTATGAACGA CGGACTGGCC GCATTAGAAG GTGCAACGCC ACAGGAAATA
GCCGAACGAT CTGCCGGAAA CCTGATCAAT GTACCCTGGG TGGAAGCGGA AGACGTGGCC
CATATGGTCG TATTTCTTGC TTCGGATAAA GCCCGTTATG TGACAGGCGC TTCTTTTGTA
CTGGACGCCG GACTACTCAC CCGATAA
|
|---|
| Protein sequence | MTQDLKNKTA FITGAAHGQG RAAALALAEE GVHIAAFDIA RQMDYPGYTL GSTSELDSLK
TACEALGVQC LTFTGDVRDN AAVKQAVTAA AEAFGRIDIL FNNAGICAYG VTHEMPEEEW
DAMIDINLKG AWIAGRHVIP VMIAQGGGVI INNSSIAGLR GMNRLSHYAA SKWGLTGLTK
SWAIELAPYN IRSVAIHPTG VNTPMNDGLA ALEGATPQEI AERSAGNLIN VPWVEAEDVA
HMVVFLASDK ARYVTGASFV LDAGLLTR
|
|---|
| |