| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3938 |
|---|
| Symbol | |
|---|
| ID | 8360111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4893528 |
|---|
| End bp | 4894403 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644966112 |
|---|
| Product | Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase |
|---|
| Protein accession | YP_003123601 |
|---|
| Protein GI | 256422948 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | [TIGR03381] N-carbamoylputrescine amidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0480903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.165411 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAG TTAAAGTAGG TTTTGTGCAA ATGTCCTGTA GCGGCAATAA GGCTGAAAAC
CTTGCGAAGG CTACAGAGCG TATACGTGAA GCTGCTGCCA AGGGTGCACA GATTGTATGT
TTGCAGGAAT TGTTTACTTC CCTTTATTTC TGTGACGTGG AGGATTATGA TAATTTCTCC
CTGGCAGAAC CTATTCCCGG TCCATCTACC GATGCTTTGC AGAAAGTAGC GGGAGAACTG
GGCGTTGTGA TTATCGCCTC TCTGTTTGAG AAGCGTGCAC AGGGTCTTTA TCACAACACT
ACCGCCGTGC TGGATGCCGA CGGCAGTTAC CTGGGTAAAT ACCGTAAGAT GCATATTCCT
GATGATCCGG CATACTACGA GAAATTCTAC TTCACTCCCG GTGACCTTGG CTATAAAGTA
TTCAAAACAA AATTCGCCAC TTTCGGTGTA CTGATCTGTT GGGATCAGTG GTATCCGGAA
GCAGCAAGGA TCACTGCCCT CATGGGAGCG GAAATCCTCT TCTATCCGAC TGCTATCGGT
TGGGCGACCA GCCAGGATGA AGCGACCAAC GTTGAGCAAT ACAACGCATG GCAGACCATC
CAGCGCAGCC ACGCCGTTGC CAACGGTATC CACGTGGTAA GCGTAAACCG TGTAGGTTTC
GAGCAGGAAG GCGCTATGAA ATTCTGGGGT GGCTCATTCA TCGCCAATCC ATTCGGTTCT
ATCATCTACC AGGCTTCCCA CGAAAACGAG GAAGTGTTCG TACAGGAACT GGACCTGGGT
CAGACCGACA GATATCGTAC ACATTGGCCG TTCATGCGTG ACAGAAGAAT TGATTCTTAC
GCTCCTATCA CCAAAAGATT TATCGACGAA GCATAA
|
|---|
| Protein sequence | MSKVKVGFVQ MSCSGNKAEN LAKATERIRE AAAKGAQIVC LQELFTSLYF CDVEDYDNFS
LAEPIPGPST DALQKVAGEL GVVIIASLFE KRAQGLYHNT TAVLDADGSY LGKYRKMHIP
DDPAYYEKFY FTPGDLGYKV FKTKFATFGV LICWDQWYPE AARITALMGA EILFYPTAIG
WATSQDEATN VEQYNAWQTI QRSHAVANGI HVVSVNRVGF EQEGAMKFWG GSFIANPFGS
IIYQASHENE EVFVQELDLG QTDRYRTHWP FMRDRRIDSY APITKRFIDE A
|
|---|
| |