Gene Cpin_3936 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3936 
Symbol 
ID8360109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4891122 
End bp4891877 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content48% 
IMG OID644966110 
Producthypothetical protein 
Protein accessionYP_003123599 
Protein GI256422946 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.186569 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.167118 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAAC CTGTATTTAA AACCGTTTTC AGACTTACCC TTGCCGCTGG CCTGTTTTCA 
GGTATCCTTT TCGCAGTTGC ATCCCCCACC GCGGGCAATC GTACCAGAGT AGTCGCATTG
ACAGAGAATA AAGTGGGCGC CAGAATGGCC CTGTTCTCAC AGCTCAAACT TGACTCCCTC
GGATTGTCTA AAGAAGCATT TGCTTTTGCG CTGGCAGGAA TGGAAAAACT CGCTAAGGAA
GGTAAACTCA GCAATCCGGA TCTACTGACC ATTGCCGACT TCAGTTTGCC CTCCAGCAAG
AAAAGACTGT TTGTGATCGA CCTGGCAAAA GGAGAAGTAT TGTTCAACAC ATTGGTATCT
CATGGAAGGA ATTCCGGTAC CGAACTGGCA ACTAACTTTT CCAATGCGCC GGAGAGCTTT
AAAAGCAGTT TAGGATTTTA TGTAACCGGC GCTACCTATA AAGGCGAACA TGGTTACTCG
CTGCGCCTGG AAGGGGAAGA AAAAGGCATC AATGACAACG CGATGAGCCG CGGCATTGTA
ATGCACAGCG CAGCTTATGT AAACGAACAG ATCGCAAAAT TACAGGGGTA TATCGGCCGT
AGCCTGGGAT GCCCTGCGAT TCCGGAGAAG ATACACCGCC AGATTATTGA GGCGATTAAA
AACGGCACCT GCCTGTTTTT ATATAGTCCG GATAAGGCGT ACATGGCCAA CTCTAAAATG
CTGGCAACAC CGGAGATCGA TACGACGATC GCATAA
 
Protein sequence
MKKPVFKTVF RLTLAAGLFS GILFAVASPT AGNRTRVVAL TENKVGARMA LFSQLKLDSL 
GLSKEAFAFA LAGMEKLAKE GKLSNPDLLT IADFSLPSSK KRLFVIDLAK GEVLFNTLVS
HGRNSGTELA TNFSNAPESF KSSLGFYVTG ATYKGEHGYS LRLEGEEKGI NDNAMSRGIV
MHSAAYVNEQ IAKLQGYIGR SLGCPAIPEK IHRQIIEAIK NGTCLFLYSP DKAYMANSKM
LATPEIDTTI A