| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3935 |
|---|
| Symbol | |
|---|
| ID | 8360108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4889166 |
|---|
| End bp | 4890770 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644966109 |
|---|
| Product | ErfK/YbiS/YcfS/YnhG family protein |
|---|
| Protein accession | YP_003123598 |
|---|
| Protein GI | 256422945 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0444109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.199374 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATA ATGTTTTATT GATCTTAACT ACTTTTACTA TAGCTACCTT TTCTTATAGC
TGTGAAACCA GTACAAAGCG AGCAGAAAAG GAGGCAATCG TTATTACCCC AAGAAATACA
GAGATAACAG CAGCGAATGC TTACAATAAT CTCTTTCTTG ATACGAGCGC CATCAATAAA
TTCATTACTA CACAAAAACT AAATGATACG ATGGCGGCAA GATTGCGTAG TTTCTATAAT
GCGCGCAATT TCGAGTTCGC CTGGTTTGAT AATACCGGTC TCAACGAACA GGCATACGGT
TTTCGTAGTC TGTATGATTA TAGCATAGAC ACCAGCGAGG GCAATAAATC ATTAGAATAC
CGCCTCAATG CACTAATGAA CGGGGATGTT GATTCTGCGG TTTCTTCTAA AGATGCCAAT
ATTGTAAAAA CAGAATTACA GTTAACACAA CGTTTCATAG ATTATTATCT GAGCAATAGT
GAAGGCAATA TAGAGGGCCT GGAACATGCA GTACCACTGA CTAAATCGGA GGTGCTGAAA
AAGGCATCCG CTGTGTTAGC CGACAAGGAA ACGAATATGA GAGGACAGAG TTATGCTGCC
TTGCATAAAT CCCTGCAACG GTACGTTGAC ATTGCAGAAA AGAACTCCTG GGACACGATT
AGGATAGAAA AGAAGAAGAG ATATAAGAAA GGAGATAGTA CGGCTGTGAT AGCATGGGTG
AAAAAGCGTT TACAGGCGAC AGGTGAGTAC AGTGACAAGG ATACGTCTAC GGTCTTCAAT
GATGCACTGG AAACGGCTGT AACCGCTTTC GAAGCAACAC ATGGTCATAC ACCAAAAGGA
GTAATCACAG ATACTTTATT ACGGGAGATG AATATGCCGG CTATCAAACT GGTGCAGCGT
ATACTGATCA ACCTGGAAAG AATGCATTGG GCGCCGGCTA ATCCGGAAGG CCGTCTGATT
CTCGTAAATA TTCCTGAATT CGGTTTGCAT GTCTGGAATG GCAGTAAGAA GGAATTTGAT
ATGCCGGTTG TAGTGGGTAA GGAAGGTAAG AGTACTACGA TGTTTTCCGG TAAACTGGAT
CAGATTGTGT TCAGTCCTTA CTGGAACCTG CCGAACAGTA TTGTAAAAGA AGAAATCTTG
CCTGCCTTGG CGCGTAATAA GAACTATATC AGCAGTAAGA ATATGGAGAT TACGGGAGAG
CGCAATGGTT TACCTATTGT GCGTCAGAAG CCAGGGAAGG ACAATCCTTT GGGACAGGTG
AAATTCCTTT TCCCGAATAG CTTTAATATC TATTTCCACG ATACCAATCA GAAGTATCTT
TTCGACAGAG ATCAGCGTGC ATTCAGTCAT GGTTGTATCC GTCTGGGAGA TCCGGTGAAG
ATGGCCAATT ATTTACTGGC AGATAATCAG AACTGGTCCG CAGAGCGTAT TGACAGTGCG
ATGAACAGTG GTAAGGAAAA GTATGTGAGA GTGAAAGATC CGGTGCCGGT ACTGATTACG
TATTATACAG CCTGGGTAGA TGAGGCAGGG AAATTACAGT TCAGGGAAGA TATTTATGAT
CATGATACCT ATATGGCGGG TAAGCTGTTT ACCGACGCTA AATAA
|
|---|
| Protein sequence | MKNNVLLILT TFTIATFSYS CETSTKRAEK EAIVITPRNT EITAANAYNN LFLDTSAINK
FITTQKLNDT MAARLRSFYN ARNFEFAWFD NTGLNEQAYG FRSLYDYSID TSEGNKSLEY
RLNALMNGDV DSAVSSKDAN IVKTELQLTQ RFIDYYLSNS EGNIEGLEHA VPLTKSEVLK
KASAVLADKE TNMRGQSYAA LHKSLQRYVD IAEKNSWDTI RIEKKKRYKK GDSTAVIAWV
KKRLQATGEY SDKDTSTVFN DALETAVTAF EATHGHTPKG VITDTLLREM NMPAIKLVQR
ILINLERMHW APANPEGRLI LVNIPEFGLH VWNGSKKEFD MPVVVGKEGK STTMFSGKLD
QIVFSPYWNL PNSIVKEEIL PALARNKNYI SSKNMEITGE RNGLPIVRQK PGKDNPLGQV
KFLFPNSFNI YFHDTNQKYL FDRDQRAFSH GCIRLGDPVK MANYLLADNQ NWSAERIDSA
MNSGKEKYVR VKDPVPVLIT YYTAWVDEAG KLQFREDIYD HDTYMAGKLF TDAK
|
|---|
| |