| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3905 |
|---|
| Symbol | |
|---|
| ID | 8360078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 4857117 |
|---|
| End bp | 4859897 |
|---|
| Gene Length | 2781 bp |
|---|
| Protein Length | 926 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644966079 |
|---|
| Product | parallel beta-helix repeat protein |
|---|
| Protein accession | YP_003123568 |
|---|
| Protein GI | 256422915 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0449733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0115545 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAG TATCGCCAGG AGGAGGAGTT CCAAACACGT TAGTGCAGGG TTTTGACCCC
AATATCGGCA CCTATCTTGG TTGGCAGAAG GCTACAACTA AGATAGACGG GACATCCATT
GTGGACGCAG ATGCAACTGG TAAGATGTTC CTTAAGGATA CTACAACTGG TGAGTATTAC
CGTCGTGGGA TCGAGCGTTC AATATCCGTA TTGATGTTTG GCGCAGATCC TTTCGGGGTA
AGTGATTCGA CCCAGGCATT CCGTGACGCT GCAAACGTGA GTAACCTTAC TGGTGAGGTG
TGGGTGCCTA ATGGCAACTA TAAGATCACT GGAACAATCA ATCTCCCTTT CGATGGGATA
CGGTTCATTT GTGACACCAA CGCCATCATT AAACCGGTCG GCACCTTTAA TGTATTTACC
TGCTCGTCAA ACTACTGTGA GTTCATGGTG AATATAGACG GAACGGCGAC TAAACCAACC
GGAGGCACTG CTGCATACGT CGCTTCGATA GTATTATTTG GCACAAACAG ATGTTGGATA
CATGACTGCC GCATAACCAA CTTCCAGGGT GGCGGTATAT CCCTGCTTCA GCGGAGTTCC
ACTATTGGCT GTACCTATAA CGTGGTTGAA AACAACTACA TTGAGAATTG CGTAGGCAAG
GACGGGAGTG GATCACTGCA GGATATGTCC CATATCCGCA TCGGCTATGC TGGAGATGGC
TATTTCCACG TTGGCAATAA GATATTGCGC AACACCCTGT TGGGTAATCA CAACATGGAA
ATCGGCATCG GTGCTATATG TCATGGATAT GATAACCTGT TTGAGGGGAA TACGATCAAA
GATTTTGATG CCTACGGGAT TGCTGCTTAC GAAGCATCTT ATGGCGATGG TACTGTTCCA
TTGCTTTATC GTTGTGGTAT TGCTTTCAAT CATATATCCG GTATTGGCGT TCTGTCAGGC
ACGACAGCAA AAGGGATGGG GATCTACATG CAGAAATGCC ACTATTCTTC CATAGTAGGT
AACTGCCTGG ATAATACTAT GTTGGGATCG AACCTGTCTG GGTCATTGTC AGAGGCTGCA
ATCGGATTGG GTCAGTCTAT AGGAACAACG GTAACCAGTA ATGTACTAAT GAGAAATAAC
AGGCACGGCA TACGTGCGGT CGCTTGTTTT AATGGGAATA TCAGTGGGAA TACCATAGAC
ACTACCGGAG GATTCGGTAT TTATATAACT GACTGTTCGG ATTTTTCTGT GACAGATAAT
AACATTTATA AGGCTACCGC CACCGGTATA AATGGACTTT TCCGTAGTAC ATTGGATAGC
GATGTTGCGG CAAATGGTTT GATGGCAGAT TACGCTGGCC GTCCTACAGG TACGGGCCTG
GTGATAACCG GAAACACTAT TGAGAAGTCA CAGAACGCGA ACCCTGCCAT AAGCCTCACT
GGAACCGCTG CCGGTCTCCA AGGTGGCATA AACAGGAATT ATAACCCGAT TGATGGCCTG
ATCATAGCAG ATAACACAAT ACGGGTGTCT ACTACGGGCA TCAACCTGGC ATTGACTATA
AACAGTAATG TTAGTCGTAA TATAACAAGA CACTTTGCCA CAAATGCTAC CGGTATAATT
ATCGGTTCTA CTTGCGACAA TGTAATACTA ACACAGAACG ACATCAAGCC AGATAGTTCC
ATCGCCAGTA TGGCTCAGGG GATCGTTTAC TCCGGGACCA ACCCTATTTT TGGCCAGAAC
ATCATCGGGG CTACCAGTGG GTTGCGAATT TCTTACAATG GTATAAACAT CCTGGCATCT
AAGTTTGTCG GATACAGCAC GGCCGCACCT GGCGCAGGAA CGTGGGCAAC TGGTGACCAT
ATTGTCAATA CGAATCCTTC AATAGTCGGA ACTGACCCTG ATCGGCAATA TTTCATAGAA
GGCTGGACTT ACATAGCTAG TTCTTGGAGA GAATGCCGCT TTTACCCAAC TCTTAGAGTA
ACCGATAGGG CCGTAAGATC GGTTTCCGCT AATACGACAC TGACCCTTGA CGACGAGTAC
GTTGAGGTAG ATGCCACGTC TGGTAATGTG ACTATCACTC AACCGGCCGC TCTATCAGGG
AAGCGATTTA TCATCAAGAA AATAGACAGC ACGCTGAACA CAGTAACTGT CATCAATTCT
GGTGGCCTAA CATTCGACCA GAATGGTACC AGCCGGTCTA TGAATATAGG TCGGGGGATG
CTTCATAGTG AATTCAACGG CACATATTGG TCAATATTAA TGCTCAGCAC TCCATCTGGC
GCATTATCCC CAAGACTTGC TACATACACA AATGCAAATG GTGTGCAAGT TGTTGACCAG
GGGTGTGCTT CATTTTCTAC TGGAAACACT AACAGAACAT ACCAATTGCT TGCCGCAAAT
CTGTGGACGA ATAAATTTGC TTTAGTAAAA AAGACTGATT CTGGTACTGG CACAGTACAG
ACACTGCCGG CGTCCGGCGA GAATATAGAC GGTGCTAATG GAAAGACGAT TCGGGGACAA
GGTGGATACC TCTTATTATA CTCTGATGGA ACCAATGTAA TGGTAGTATC CATATCAAGT
ATAGGGGAAC AGTATTCAGG AGTATCTACA AATTCAACTG ATCTGCTTTC AACATCATTC
CTTGATGCGA ACTTCCCAAC AGCCAATTTC GGGGACGAAG TATGGTTTAC CAGTCTTGCA
GACGCCCCTT CAAATATAGG ATGGGCAAAG AAAAACTCAG GTTATTGGAT TACAAAAACA
GACTATGTTA AGACTTCTTA A
|
|---|
| Protein sequence | MKLVSPGGGV PNTLVQGFDP NIGTYLGWQK ATTKIDGTSI VDADATGKMF LKDTTTGEYY
RRGIERSISV LMFGADPFGV SDSTQAFRDA ANVSNLTGEV WVPNGNYKIT GTINLPFDGI
RFICDTNAII KPVGTFNVFT CSSNYCEFMV NIDGTATKPT GGTAAYVASI VLFGTNRCWI
HDCRITNFQG GGISLLQRSS TIGCTYNVVE NNYIENCVGK DGSGSLQDMS HIRIGYAGDG
YFHVGNKILR NTLLGNHNME IGIGAICHGY DNLFEGNTIK DFDAYGIAAY EASYGDGTVP
LLYRCGIAFN HISGIGVLSG TTAKGMGIYM QKCHYSSIVG NCLDNTMLGS NLSGSLSEAA
IGLGQSIGTT VTSNVLMRNN RHGIRAVACF NGNISGNTID TTGGFGIYIT DCSDFSVTDN
NIYKATATGI NGLFRSTLDS DVAANGLMAD YAGRPTGTGL VITGNTIEKS QNANPAISLT
GTAAGLQGGI NRNYNPIDGL IIADNTIRVS TTGINLALTI NSNVSRNITR HFATNATGII
IGSTCDNVIL TQNDIKPDSS IASMAQGIVY SGTNPIFGQN IIGATSGLRI SYNGINILAS
KFVGYSTAAP GAGTWATGDH IVNTNPSIVG TDPDRQYFIE GWTYIASSWR ECRFYPTLRV
TDRAVRSVSA NTTLTLDDEY VEVDATSGNV TITQPAALSG KRFIIKKIDS TLNTVTVINS
GGLTFDQNGT SRSMNIGRGM LHSEFNGTYW SILMLSTPSG ALSPRLATYT NANGVQVVDQ
GCASFSTGNT NRTYQLLAAN LWTNKFALVK KTDSGTGTVQ TLPASGENID GANGKTIRGQ
GGYLLLYSDG TNVMVVSISS IGEQYSGVST NSTDLLSTSF LDANFPTANF GDEVWFTSLA
DAPSNIGWAK KNSGYWITKT DYVKTS
|
|---|
| |