| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3880 |
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| Symbol | |
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| ID | 8360053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4836928 |
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| End bp | 4838367 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644966054 |
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| Product | portal protein |
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| Protein accession | YP_003123543 |
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| Protein GI | 256422890 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4695] Phage-related protein |
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| TIGRFAM ID | [TIGR01537] phage portal protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.100107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.024166 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAAATA TTCTAACTAG GCTATTGGGT CCCTCCCAGA AGGATCTCGC CGAGATGGCA
AATTCATATA TGCAGCAATG GCTGAATAAT CGTGGTCCGG TGTTTACGCC TGTTATGCCA
ATATACCCCA AGGTTGGCCA AAAAGAGGCT GTACAAAAGG GGTACTGCGA TAATACAGAC
ATATTCTCCA TAGTGAGCAG AAAGGCCCGC ATGGCCGCCG GAATTCCGTT CTATGTGTAC
AAGGTAAAGA AAGAAGGAAA GAAGGCTTTC AGGGAGTACA AAGCCTTGAT GTCTGGGGAA
AAGATGACCA TGGAGTCATT GGCTATGGCA AATGTGCTGA AAATAAAGGC AATGGAGGAG
GTGGAGGATA CCAATGGCAT AAGTCAGCTT CTGCAGCGAC CTAACAAAGA CCAGAGTCAA
ACGGAGTTTC TTGAGCAGGT TTATGGCTTT CTGGAAATCA CTGGGAACAG TTATATCTGG
AAGGAAAAGT TATCAATGGG AGCTAACGAG GGTAAGCCTA TAAGTATGCA CTCGGTGGCC
AGTCAATACA TGACCGTAGT TCCAGATGGG ACATTCCCGG TTTCTGTATT GGGATATATG
TACTTTCTCT GGGGGGAAAT GGGACTGCAG AAGAGTGAGA TTATCCATAT GAAGTACCCA
AACTATGATT ACCAGCCAGA TGGTTCTCAT TTAATGGGCC TTTCCCCATT GCAGGCCGGA
CATAAGACGA TGGCGCGATC TGATAGTGAA GAGGATAGCG CTACCGCTCA ATTCCAGCAT
GGAGGACCAG CCGGTATGTT TTATAATGAA TCCATGGCGC CTACAGAACA GAACATGTCT
CTGGTGGGTG GATTGAAGAA GAAGTGGGAG GCAGAAACGT GGGGCAACAA GAATCGGGGT
AAAATTCTAT TCTCACCTGG TAAGGTGGGC TATGTACAGG CTGGATTATC TCCGGTCGAT
CTTCAGATAC TGGAATCTGG AAAGTGGACC TTCCATAGAC TGTGCAATCT ATGGCATATG
CCGGCGGCCA TCTTCAATGA GACTGAGCAC GCTACTATGA GCAATATGGA GCAGTTCTAT
AAGGCTGCTT ATACAGATGG CGTTATCCCA TTGGTCATCA AGCTAAGAGA CGCCCTCAAT
GCATCATTAC TACCTGACTT TGGTGATCCT GGGGAATACT TCATTGATGC CGACTTTTCT
AATATACCTG TTCTCCAGCA GGACATGAAG ACGCTCACGG AGTGGATGAC AAACTCTTGG
TGGATCACTC CAAATGAGAA GAGGGAAGCG CAGAAGTTCG GCCGACTGCC TGATCCAAAT
ATGGATAAAG TGTGGATGCC AACAGGGCTG GACATGATGG ATAATATGTC AGCAACACCG
GATCAGATTG ATCAGGATGT TATCGATTTG GCGAAGTCAG GGCTAAATCC ATATAAGTAA
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| Protein sequence | MANILTRLLG PSQKDLAEMA NSYMQQWLNN RGPVFTPVMP IYPKVGQKEA VQKGYCDNTD
IFSIVSRKAR MAAGIPFYVY KVKKEGKKAF REYKALMSGE KMTMESLAMA NVLKIKAMEE
VEDTNGISQL LQRPNKDQSQ TEFLEQVYGF LEITGNSYIW KEKLSMGANE GKPISMHSVA
SQYMTVVPDG TFPVSVLGYM YFLWGEMGLQ KSEIIHMKYP NYDYQPDGSH LMGLSPLQAG
HKTMARSDSE EDSATAQFQH GGPAGMFYNE SMAPTEQNMS LVGGLKKKWE AETWGNKNRG
KILFSPGKVG YVQAGLSPVD LQILESGKWT FHRLCNLWHM PAAIFNETEH ATMSNMEQFY
KAAYTDGVIP LVIKLRDALN ASLLPDFGDP GEYFIDADFS NIPVLQQDMK TLTEWMTNSW
WITPNEKREA QKFGRLPDPN MDKVWMPTGL DMMDNMSATP DQIDQDVIDL AKSGLNPYK
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