| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3823 |
|---|
| Symbol | |
|---|
| ID | 8359995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4807928 |
|---|
| End bp | 4809670 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644965996 |
|---|
| Product | bifunctional NADH:ubiquinone oxidoreductase subunit C/D |
|---|
| Protein accession | YP_003123486 |
|---|
| Protein GI | 256422833 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01961] NADH (or F420H2) dehydrogenase, subunit C
[TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.203539 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACTG CCGAAAATCA CATACTAACG CTTCTACACC AACGCTTCGG CCTTGATGCA
TTACAGCAAC AAAACACGGC TGATGGCCTG CTCACCTTAT GGATCGGCAA AGCCGATATT
GTAAATACCG TGCAGTTCCT GCAACAAAAC GCCTACCTGT CGTTATATGA TCTCTGTGGT
ATTGACGAAC GCGACAGGGC CCGCAAAGAG CAGCTCCCTG TCGCAGACTT CTCGGTAGTC
TACCTGCTCT TATCATTCAA AGACAACAGC TTCATCCGAC TCAAAGTGCC ACTGACCGGT
GAATATCCCT CCCTCCCTTC CATCACTGCT ATCTTCCCAA ATGCAAACTG GTACGAACGC
GAAATCTACG ATATGTTTGG CATCCGCTTC GAGGGCCATC CACATCTGCA ACGCATACTG
ATGCCACAAA GCTGGCAGGG ACATCCCTTA CGTAAAGAAC ACCCCGCACG TGCTACTGAA
ATAGGTCCTT TCCGCCTCTG GGACGAAAAG CAGGACGCCG AACAGGAAGC CCTCCGCTTC
AAACCGGAAG AATGGGGTAT GCAGACGCAT AATGACGATG TGGATTTTAT GTTCCTGAAT
ATCGGTCCGC AACACCCCGG TACACACGGC GTATTACGTA TCATACTACA ACTGGATGGT
GAAGAAATTG TAGACGCGGT TCCCGAAATC GGCTTCCACC ACCGGGGTGC AGAGAAAATG
GGAGAACGCC AAAGCTGGCA TACTTATATC CCCTATACGG ATCGTATTGA TTATCTCGGT
GGCGTCATGA ATAATCTCTC CTATCTGCTG GCCGTAGAAC AGCTGGCAGG TATCACTATA
CCCGACCGTG CGAAAGTCAT CAGGGTCATG CTCTGCGAAT TGTTTCGTAT CAATAGTCAC
CTGGTATGGT TCGGCACCTT TGCACAAGAC CTGGGGCAAC TATCCCCCGT CTTCTACATG
TTCACAGAAC GCGAAAAGAT CTTTGATGTG ATAGAAGCAG TATGCGGTGG CAGAATGCAT
CCTAACTGGT TCCGCATCGG CGGCGTTGCA CAGGACCTCC CGAATGGATG GGATACACTG
GTACGTGATT TTGTCAATCG CTTTCCGGCC AAACTAAAAG AATTTAACGA TATGGTATTG
CGCAATAGTC TGATTAAAGC GCGTACAAAA GGTATCGGCG TATATACGCT GGAAGAAGCG
ATCGAATGGG GTGTTACCGG TCCCGGGTTA CGTGCCTGCG GCTTTGACTG GGACTTCCGC
AAGAAGCGCC CCTATTCCGG TTACGAACTA TTTGAATTTG ATATCCCCAT TGCGCAGCAT
GGCGATTGCT ATGACAGATC TGTCGTGAGA GTAGAAGAAA TGAGGCAAAG TCTGCGCATC
ATCGAGCAGT GTCTGAACAA TATGCCTTCC GGCAATTACA AGGCAGAACA TCCGCTCACC
ACCCCTCCTA TCAAGAAACA TACAATGCAG GATATTGAAA CACTGATCAC CCATTTTCTC
AACGTCAGCT GGGGCCCGGT TATTCCGCCG GGAGAAGCCA TTAGTTGTGT GGAAGCTACC
AAAGGGGCTA CCAGTTACTA CCTGATCAGT GATGGCAATA CGTCCTCCTA CAGGACACGT
ATACGGACGC CCTCGTTCCC CCATATGCAG ATGGTACCCT ATATCAGCAA AGGGTATACG
GTAGCCGATC TGCTGTCTAT ACTGGGAAGC GTGGACTATG TGCTGGCAGA TATTGACAGA
TAG
|
|---|
| Protein sequence | MQTAENHILT LLHQRFGLDA LQQQNTADGL LTLWIGKADI VNTVQFLQQN AYLSLYDLCG
IDERDRARKE QLPVADFSVV YLLLSFKDNS FIRLKVPLTG EYPSLPSITA IFPNANWYER
EIYDMFGIRF EGHPHLQRIL MPQSWQGHPL RKEHPARATE IGPFRLWDEK QDAEQEALRF
KPEEWGMQTH NDDVDFMFLN IGPQHPGTHG VLRIILQLDG EEIVDAVPEI GFHHRGAEKM
GERQSWHTYI PYTDRIDYLG GVMNNLSYLL AVEQLAGITI PDRAKVIRVM LCELFRINSH
LVWFGTFAQD LGQLSPVFYM FTEREKIFDV IEAVCGGRMH PNWFRIGGVA QDLPNGWDTL
VRDFVNRFPA KLKEFNDMVL RNSLIKARTK GIGVYTLEEA IEWGVTGPGL RACGFDWDFR
KKRPYSGYEL FEFDIPIAQH GDCYDRSVVR VEEMRQSLRI IEQCLNNMPS GNYKAEHPLT
TPPIKKHTMQ DIETLITHFL NVSWGPVIPP GEAISCVEAT KGATSYYLIS DGNTSSYRTR
IRTPSFPHMQ MVPYISKGYT VADLLSILGS VDYVLADIDR
|
|---|
| |