Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cpin_3807 |
Symbol | |
ID | 8359979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chitinophaga pinensis DSM 2588 |
Kingdom | Bacteria |
Replicon accession | NC_013132 |
Strand | - |
Start bp | 4787939 |
End bp | 4788472 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644965980 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003123470 |
Protein GI | 256422817 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.329314 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.13378 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGAATA TCGAGGATGC CGAATTGCTG TTAGCCATAA AAAATGGCAG CGAAAAGGCA TTTGGCACAC TTTATAAAAA ATACCAGCGG TTTATCGCGC TCAAGATTTC CTATATGTTC GGGGATCCTG GTGAGGCTGA CGATATCGTG CAGGATGTCT TTGCCGAATA CTGGATAAAA AAAGAGCAGA TAAACGTTCA TACAGATTGC CGGGGCTACC TGCTAAGAGC AGCCATTAAC CGCGCCAATA ATAAACTCAA TAAAAGAAAA ACAGATTATA ACCGGGAACA AAGATACTCC CGGGCTGCAC CCCCTTTTGA CGATCCGTCG GCACACAAAG ATTCGCTCTC AAATGAAGTT GTTCTGGCAT TGGATAAATA CCTGCCCGCC GCCGATTCAA ATATAATGAA GCAGGTCTAC CTCGAAGGAC GTAAACAACA GGAAGTGGCG GACGAATTAA ACATCTCGCT GCCCACTTTA AGGGGCGTCA TCGTCAGGTC TGGCAAAGCA CTGAGAAAAA TATTTAAAAA ATAA
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Protein sequence | MENIEDAELL LAIKNGSEKA FGTLYKKYQR FIALKISYMF GDPGEADDIV QDVFAEYWIK KEQINVHTDC RGYLLRAAIN RANNKLNKRK TDYNREQRYS RAAPPFDDPS AHKDSLSNEV VLALDKYLPA ADSNIMKQVY LEGRKQQEVA DELNISLPTL RGVIVRSGKA LRKIFKK
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