Gene Cpin_3807 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3807 
Symbol 
ID8359979 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4787939 
End bp4788472 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content44% 
IMG OID644965980 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003123470 
Protein GI256422817 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.329314 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.13378 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAATA TCGAGGATGC CGAATTGCTG TTAGCCATAA AAAATGGCAG CGAAAAGGCA 
TTTGGCACAC TTTATAAAAA ATACCAGCGG TTTATCGCGC TCAAGATTTC CTATATGTTC
GGGGATCCTG GTGAGGCTGA CGATATCGTG CAGGATGTCT TTGCCGAATA CTGGATAAAA
AAAGAGCAGA TAAACGTTCA TACAGATTGC CGGGGCTACC TGCTAAGAGC AGCCATTAAC
CGCGCCAATA ATAAACTCAA TAAAAGAAAA ACAGATTATA ACCGGGAACA AAGATACTCC
CGGGCTGCAC CCCCTTTTGA CGATCCGTCG GCACACAAAG ATTCGCTCTC AAATGAAGTT
GTTCTGGCAT TGGATAAATA CCTGCCCGCC GCCGATTCAA ATATAATGAA GCAGGTCTAC
CTCGAAGGAC GTAAACAACA GGAAGTGGCG GACGAATTAA ACATCTCGCT GCCCACTTTA
AGGGGCGTCA TCGTCAGGTC TGGCAAAGCA CTGAGAAAAA TATTTAAAAA ATAA
 
Protein sequence
MENIEDAELL LAIKNGSEKA FGTLYKKYQR FIALKISYMF GDPGEADDIV QDVFAEYWIK 
KEQINVHTDC RGYLLRAAIN RANNKLNKRK TDYNREQRYS RAAPPFDDPS AHKDSLSNEV
VLALDKYLPA ADSNIMKQVY LEGRKQQEVA DELNISLPTL RGVIVRSGKA LRKIFKK