| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3794 |
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| Symbol | |
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| ID | 8359965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 4770439 |
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| End bp | 4772310 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644965966 |
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| Product | glycoside hydrolase family 2 sugar binding |
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| Protein accession | YP_003123457 |
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| Protein GI | 256422804 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.012505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0216504 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTTTG TCACGAGCAT AACCTTGACA AACATATATT TTATAATGAA AACAAGAAAC
TGCCTGCTTT TTTTAGGCGT CATGCTATTC CATGGAGTCC TTGTTAAGCA ATCCTTCGCC
CAGGACCCAA AACTACCGAC CCAATGGACC CAGGCCGCAA TGACGGCAAC CGCCCCATTC
CCGGAGTATC CTCGTCCGCA GCTGGAACGA AAACAATGGA TGAGTTTAAA CGGGAAATGG
GATTACATTG GTGGCAAACA GGCGGCCAAC GCCCTGAATC CCGCTAAACC GATCGCTTTT
AGTGATAAGA CGGAAAAGAT ATTGGTCCCT TACTGCCCCG AGTCTGTACT TTCAGGAATC
GAGCGTGACC AGGAAATAAA CATGTGGTAC CGCCGGACCT TTGACCTCCC TGCTGCCTGG
AAAGGTAAAC AGGTGATCAT CAATTTTGAT GCGGTCGACC ATGACGCCAC CGTATTTGTC
AATGGAGAAA AAGCCGGAAC ACATGCCGGT GGCTATACCT CCTTTCACAT CAACATTACA
AGATTCCTCA AAGCTGGTAA CAATACCATC GTCGTCGCGG CACACGACCC CAATGACGGA
ACAACGCCAT CTGGTAAAAA TGGTCCGCGT GGAGACTATA CCTTTACCTC AGGCATCTGG
CAAAGTGTAT GGCTGGAACC AGTAAGCGAA CATTACATCA AAAACATCCG CCTGCTCCCC
GATCTCGTAA ACAACAGACT CGAAGTATTC GTTGACGCAG ATGCGGCACA GGTCAGAGCA
ACTGCACTCG ACGGCAAAAA AGAGGTAGCG GCAACAACAG GAAACGCGGG AACAAAATTG
TATATCCCGA TAAAGGAGCC TAAACTATGG TCACCTGAAG ATCCGTTTCT ATACGATCTC
AAAATAGCGC TGACCGACAG CAAAGGCAAT GTCATGGATG AAGTCAACAG TTATTTCGGG
ATGCGCGATA TTAAACTGGG TAATGTAAAC GGGGTGATAA GACCTTTGTT GAATAACAAA
TTTGTGATGC AGGTGGGATT ACTGGATCAG GGATACTGGC CCGATGGTAT ATTGACAGCG
CCCACAGAAG AAGCCCTGAA ATACGATATT GAGTTCACTA AAAAGGCAGG CTTTAACCTG
ATCAGAAAAC ACATGAAAAC GGAGCCCAAA CGGTTCTACT ATTGGGCAGA TAAACTGGGT
CTGCTGGTAT GGCAGGACAT GCCGGCAATC TGGTATCAAC ATGAAGATAC GGCAAAGAAC
AGAAGCACTT TCCGGAAGGA ATTACACGCT ATGATCGACG ATCTCTATAA TTCTCCATCT
ATCATTACCT GGGTGCCATT CAATGAAAAC TGGGGCGCAT TCGATGTGAA AAAAATCACC
GACTGGGTGA AACAACTCGA TCCGTCAAGA CTAGTAAACG GCAATTCCGG TTTTAATAAT
AACCCTGGTT ATCAAAAAGC AGCAGGAGAT CCCGGCAATG GAGACTTCGT AGATACACAT
ATTTACGTCG GTCCTTATGA TGCGTCTAAA CCTGATGGGA AACGTGCAGC TTCATTGGGT
GAGTTTGGCG GTGTCGGACT ATTCGTACGC GGACATATGT GGCCGGTGGA AAATAATGCG
TACGCCTACG AACCCACCAA AGACAGGCTA ACCGACAGGT ATGTACTGTT GATGGACCAG
GTAGAACAGC TGATGCGTTA CCAGGGTTTA AGCATTGCGG TATACACACA GACCACAGAT
GTGGAACACG AAGTGAATGG TATGCTCACC TACGACAGGG CTGTAGAAAA AATGGATATC
GAAAGAGTGA AGGCAGTAAA TGAAGCGGTG ATTAAAGCAG GTAAGGAATT AAATCAAACA
CCTTCAAAGT AA
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| Protein sequence | MYFVTSITLT NIYFIMKTRN CLLFLGVMLF HGVLVKQSFA QDPKLPTQWT QAAMTATAPF
PEYPRPQLER KQWMSLNGKW DYIGGKQAAN ALNPAKPIAF SDKTEKILVP YCPESVLSGI
ERDQEINMWY RRTFDLPAAW KGKQVIINFD AVDHDATVFV NGEKAGTHAG GYTSFHINIT
RFLKAGNNTI VVAAHDPNDG TTPSGKNGPR GDYTFTSGIW QSVWLEPVSE HYIKNIRLLP
DLVNNRLEVF VDADAAQVRA TALDGKKEVA ATTGNAGTKL YIPIKEPKLW SPEDPFLYDL
KIALTDSKGN VMDEVNSYFG MRDIKLGNVN GVIRPLLNNK FVMQVGLLDQ GYWPDGILTA
PTEEALKYDI EFTKKAGFNL IRKHMKTEPK RFYYWADKLG LLVWQDMPAI WYQHEDTAKN
RSTFRKELHA MIDDLYNSPS IITWVPFNEN WGAFDVKKIT DWVKQLDPSR LVNGNSGFNN
NPGYQKAAGD PGNGDFVDTH IYVGPYDASK PDGKRAASLG EFGGVGLFVR GHMWPVENNA
YAYEPTKDRL TDRYVLLMDQ VEQLMRYQGL SIAVYTQTTD VEHEVNGMLT YDRAVEKMDI
ERVKAVNEAV IKAGKELNQT PSK
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