Gene Cpin_3764 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3764 
Symbol 
ID8359932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4742707 
End bp4744323 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content45% 
IMG OID644965933 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003123427 
Protein GI256422774 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.180542 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0415669 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGAAA TAACCCGGAT CACGCTCGAT ACTGATATGG ACCTGGTGCT GGTGCACAAG 
CGTACAATGA AACTGGGTGA ACTGGCCGGC CTCTCTCTGG CCTCTCAGAC CACCTTTGCT
ACAGCTGCCT CTGAAGTAGC CAGACATGTC ATTGAATATG GACACAACGC AGTATTGATA
CTAGGCATCC GTGCCGATAT CAAAGATTCG GAGAAATTCC TGATAGCGAA AGTACTGGAC
CGCAATATCA ACCTTACCGA AAAGATCAAT GAAAACCTGG TCTATGCCAA ACGACTAGTA
GATCATTTTA CACTGGACCG GACGGACAAA AGCATTGAGA TTACGCTGGA ATTCAGAATC
CCCGGCGCAC ATAAGATAAT TGGTAGCCGC ATAGAACAAT GGATCTCTTC TTTTAGTGTC
GAACAACCTG TATCACCTTA TGATGAAATT AAACGTAAGA ACAAACAATT ACAGGAACTG
GCCGAAAAGC TGAAAGCAAG CGAAACACAA TACAGAGATG TTACCAATGC CTTACCATTG
ATCATCTTCT CTGTAAACCA GGAGGGCGAA TTATTGTATG CTAACAGCTG GCTGAAAACA
TTAACCGGCT ACGAAGCCAC CGAACTAAAT GAGAACAAAT GGAAACCGGT TCTTAGAGAA
CAGGAATTCA CATTTGCCTG GGAAAACTGG TGGCAGCATG TAACAGAAGG GACCTCCTTC
AAGCGTGAAC TTGAGTTAAA AAACATACTG ACCGGCGACT TCATCTGGCA CCTGGTCACC
GTTATGCCAG TAACAGACGA AACAGGTGAA GTCACATACT GGACCGGTTC CATAGTAGAT
ATCCATGCAC AAAAGGTCAT GGAACAAACA CTGAGAGACA ACAAGGAGCT GAAAGAAATG
AAACTGCTGC TGGAAGAAAA AGTAGGTGAA CTGAATCGCA GCAACCAGGA ACTCGAACAA
TTCGCATACG CGGCATCTCA CGACCTCCAG GAACCATTAA GAAAAATCGT TTACTACAGC
GACTATCTGA ATAAGCACTA TTCAGAACAA ATCGATGAAC GTGGTAAACT TTACTTCGGA
AACATGATGA GCGCTAGTCA GCGAATGACA CAGCTGATCC ACGATCTGCT GAATTTCTCG
CGTATATACC GCGAAAATCT GCACCTGGTA AAAACAGATC TGAATGCACT GGCCACTGAA
GCAATGAACG ACCTGGATCT CGCTATCAAA ACCAAACATG CACAGATAGA AGTAAGCCAG
CTACCTGTCA TCTCCGTTTA TCCGATGCAG ATGCGGCAGT TGTTCCAGAA CCTGTTGTCA
AATGCGATCA AGTTCTCAGA TGAAAAACGA GCGCCCTGCG TGAAAGTATA TGCAGAGGCA
AACGGCAAAG ATGTGCAGCT GATTTTTGAA GATAACGGGG TTGGTTTCGA AGAAAAATAC
CTGGATAAAA TGTTCAGCTT ATTTCAACGC CTGCATTCGC GTGAGAAATA CGCTGGCACA
GGCATAGGGC TCGCCATATG CAAGAAGATA GCCGACTTGC ACAATGGTAC CATTACGGCC
AGCAGTCAGC CTGGAAATGG TGCAAAATTT ATATTGACCC TGCCCTCGGT TGCGTAA
 
Protein sequence
MQEITRITLD TDMDLVLVHK RTMKLGELAG LSLASQTTFA TAASEVARHV IEYGHNAVLI 
LGIRADIKDS EKFLIAKVLD RNINLTEKIN ENLVYAKRLV DHFTLDRTDK SIEITLEFRI
PGAHKIIGSR IEQWISSFSV EQPVSPYDEI KRKNKQLQEL AEKLKASETQ YRDVTNALPL
IIFSVNQEGE LLYANSWLKT LTGYEATELN ENKWKPVLRE QEFTFAWENW WQHVTEGTSF
KRELELKNIL TGDFIWHLVT VMPVTDETGE VTYWTGSIVD IHAQKVMEQT LRDNKELKEM
KLLLEEKVGE LNRSNQELEQ FAYAASHDLQ EPLRKIVYYS DYLNKHYSEQ IDERGKLYFG
NMMSASQRMT QLIHDLLNFS RIYRENLHLV KTDLNALATE AMNDLDLAIK TKHAQIEVSQ
LPVISVYPMQ MRQLFQNLLS NAIKFSDEKR APCVKVYAEA NGKDVQLIFE DNGVGFEEKY
LDKMFSLFQR LHSREKYAGT GIGLAICKKI ADLHNGTITA SSQPGNGAKF ILTLPSVA