Gene Cpin_3754 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3754 
Symbol 
ID8359922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4723532 
End bp4723876 
Gene Length345 bp 
Protein Length114 aa 
Translation table11 
GC content42% 
IMG OID644965923 
Productribosomal protein L20 
Protein accessionYP_003123417 
Protein GI256422764 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0292] Ribosomal protein L20 
TIGRFAM ID[TIGR01032] ribosomal protein L20 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00129982 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTCGTT CAGTAAATGC TGTTGCTTCC AGGGCCCGCA GGAAGAAAAT ATTAAAGCAG 
GCCAAAGGCT TCTACGGTAA ACGTAAAAAT GTCTATACCG TAGCGAAAAA CGTATTGGAG
AAAGGTCTTA CGTATAGCTA CGTAGGTCGC AAACTCAAGA AAAGAAATTA CCGTCAGCTG
TGGATCGCTC GTATCAACGC TGCAGTTCGC GCTGAAGGAA TCACTTATTC TGAGTTTATC
CATAAATTGT CAGTTAAGAA TATCGGCCTG AACAGGAAGG TATTAGCTGA TCTGGCAATG
AATGAACCAG AAACTTTCAA AAATCTGGTT GCTTCCGTTA AGTAA
 
Protein sequence
MPRSVNAVAS RARRKKILKQ AKGFYGKRKN VYTVAKNVLE KGLTYSYVGR KLKKRNYRQL 
WIARINAAVR AEGITYSEFI HKLSVKNIGL NRKVLADLAM NEPETFKNLV ASVK