| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3748 |
|---|
| Symbol | |
|---|
| ID | 8359916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | - |
|---|
| Start bp | 4712127 |
|---|
| End bp | 4713581 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644965917 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003123411 |
|---|
| Protein GI | 256422758 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000795309 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0030184 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TAACTTACTA TATAATTGCT GCAACACTGA TCACGGCCGC CGGTTGTAAG
AAATACCTGG AGCAGTCGCC CGACCAGCGT ACACAGCTTA ATTCGGTGGA GAAAGTAGCC
GAGTTGTTAG CTACTGCTTA TCCGCAGGCA GACTATGCCA CCTTCACCGA AGCGGCGTCT
GATAATGCAG CCGACAAAGG CACCGGTGGT TTCCTTACAG AACAGATCAA TACCAATCCT
TACTTCTTCC GGGATGTGAC AGAACGGGAA CAAGGCTCTC CTACCAACTA CTGGAATGCC
TGTTACCAGT CTATCGCAGC CTGTAATCAG GCGCTGGAAG CGATTGCTAA AGCAGACAAT
CCGGAAGATT ATAACGCACA GAAAGGCGAA GCATTGGTGG CCCGTGCATA CAACCACTTT
ATGCTGGTGA CCCTGTTCTC CAAAGTATAC AATGCCACAA CAGCAGCACA GGATCCCGGT
ATTCCTTATG TGACCACACC TGAGAAAATT GTCAATGCGA AATATGAAAG GAAGACCGTC
GCCTTTGTAT ATGAGCAGAT CGAAAAAGAC CTGTTAACGG GTTTACCGCT GCTGGACAAT
ACTGCTTATA AGGTACCAAA ATACCATTTC AACAAAGCCG CAGCCAATGC CTTCGCTGCC
CGTTTCTACC TGTTCAAAAA GGATTATCAG AAAGTGATCA CCTATTCGAA CAATGTATTC
CCCGGCGGAA ACTTCAAAAC CAATCTGCGT CCCTGGGTAA CGGTATACAG TCAGCTGACC
GGTACAGAAA TGGAGGCCAT CTATACCAAA GCATCTGAAA CAGCCAACCT CCTGCTGGTA
GAAGCGCCTT CCAACTGGGC CCGTTCTGTA GCCAGCTATC GCTATGGTTT GAGAACAGAC
CTGGTATATG GATTATATGG TGACCCGAAT GTAACGACAG GCAGCTGGGT ACAGCCGCTT
TACTACCGGG GCAGTACCGA AAACTGGCTA ATTCTGAAAT TCCGTGAACA TTTCGTACGC
TCCAGCGCCA ATGCTGATAT CGGGGTACCA TATACCATTT TCCCACTCTT CACAGCGGAA
GAAGCATTGT TTAACCGGGC AGAGGCCAAT ATTCACCTGG GCAACAACAC GGCTGCCAAA
AAGGACCTGG ATGATTACGC CAGCATGCGT ATAGAAAACT ATAACAGTGA CTTCAGGATC
ACAGACACGA AGTTGAGGAC CTTCTACAAA ACCTCCGATA TAAAAACAGC GCTGATTAAT
GCATTACTCG ACTTCAAACG GGCAGAGTTC ATGCAGGAAG GTACCCGCTG GTTTGACATC
TTACGCTATG ACCTACCTGT TACACATACC AGTGTAACCG GGGAATCAGC TACTCTGACC
GCCAATGATC CACGTCGTCT CTTCCAGTTA CCACAGGAAG TTGTACTGGC CGGCATTCAA
CAGAACCCCC GTTAA
|
|---|
| Protein sequence | MKKITYYIIA ATLITAAGCK KYLEQSPDQR TQLNSVEKVA ELLATAYPQA DYATFTEAAS
DNAADKGTGG FLTEQINTNP YFFRDVTERE QGSPTNYWNA CYQSIAACNQ ALEAIAKADN
PEDYNAQKGE ALVARAYNHF MLVTLFSKVY NATTAAQDPG IPYVTTPEKI VNAKYERKTV
AFVYEQIEKD LLTGLPLLDN TAYKVPKYHF NKAAANAFAA RFYLFKKDYQ KVITYSNNVF
PGGNFKTNLR PWVTVYSQLT GTEMEAIYTK ASETANLLLV EAPSNWARSV ASYRYGLRTD
LVYGLYGDPN VTTGSWVQPL YYRGSTENWL ILKFREHFVR SSANADIGVP YTIFPLFTAE
EALFNRAEAN IHLGNNTAAK KDLDDYASMR IENYNSDFRI TDTKLRTFYK TSDIKTALIN
ALLDFKRAEF MQEGTRWFDI LRYDLPVTHT SVTGESATLT ANDPRRLFQL PQEVVLAGIQ
QNPR
|
|---|
| |